Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2362 and Psyr_2363 are separated by 175 nucleotides Psyr_2363 and Psyr_2364 are separated by 168 nucleotides
Psyr_2362: Psyr_2362 - Silent information regulator protein Sir2, at 2,739,782 to 2,740,627
_2362
Psyr_2363: Psyr_2363 - Phenazine biosynthesis PhzC/PhzF protein, at 2,740,803 to 2,741,645
_2363
Psyr_2364: Psyr_2364 - conserved hypothetical protein, at 2,741,814 to 2,742,653
_2364
Position (kb)
2740
2741
2742 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2740.468 kb on - strand, within Psyr_2362 at 2740.589 kb on + strand at 2740.669 kb on + strand at 2740.688 kb on - strand at 2740.738 kb on + strand at 2740.995 kb on - strand, within Psyr_2363 at 2741.157 kb on - strand, within Psyr_2363 at 2741.398 kb on + strand, within Psyr_2363 at 2741.398 kb on + strand, within Psyr_2363 at 2741.398 kb on + strand, within Psyr_2363 at 2741.398 kb on + strand, within Psyr_2363 at 2741.399 kb on - strand, within Psyr_2363 at 2741.399 kb on - strand, within Psyr_2363 at 2741.399 kb on - strand, within Psyr_2363 at 2741.399 kb on - strand, within Psyr_2363 at 2741.399 kb on - strand, within Psyr_2363 at 2741.678 kb on - strand at 2741.678 kb on - strand at 2741.697 kb on + strand at 2741.802 kb on - strand at 2741.802 kb on - strand at 2741.802 kb on - strand at 2742.010 kb on + strand, within Psyr_2364 at 2742.010 kb on + strand, within Psyr_2364 at 2742.011 kb on - strand, within Psyr_2364 at 2742.013 kb on + strand, within Psyr_2364 at 2742.013 kb on + strand, within Psyr_2364 at 2742.014 kb on - strand, within Psyr_2364 at 2742.014 kb on - strand, within Psyr_2364 at 2742.112 kb on + strand, within Psyr_2364 at 2742.113 kb on - strand, within Psyr_2364 at 2742.113 kb on - strand, within Psyr_2364 at 2742.116 kb on - strand, within Psyr_2364 at 2742.226 kb on + strand, within Psyr_2364 at 2742.227 kb on - strand, within Psyr_2364 at 2742.227 kb on - strand, within Psyr_2364 at 2742.227 kb on - strand, within Psyr_2364 at 2742.410 kb on - strand, within Psyr_2364
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 2,740,468 - Psyr_2362 0.81 -0.2 2,740,589 + +0.2 2,740,669 + +0.0 2,740,688 - +1.7 2,740,738 + +2.0 2,740,995 - Psyr_2363 0.23 +1.1 2,741,157 - Psyr_2363 0.42 +1.0 2,741,398 + Psyr_2363 0.71 +0.9 2,741,398 + Psyr_2363 0.71 +0.1 2,741,398 + Psyr_2363 0.71 -0.1 2,741,398 + Psyr_2363 0.71 -0.3 2,741,399 - Psyr_2363 0.71 -1.4 2,741,399 - Psyr_2363 0.71 +0.0 2,741,399 - Psyr_2363 0.71 -1.6 2,741,399 - Psyr_2363 0.71 -2.2 2,741,399 - Psyr_2363 0.71 -2.1 2,741,678 - -1.0 2,741,678 - -2.8 2,741,697 + -0.9 2,741,802 - -1.8 2,741,802 - -1.6 2,741,802 - +0.4 2,742,010 + Psyr_2364 0.23 -0.2 2,742,010 + Psyr_2364 0.23 +0.4 2,742,011 - Psyr_2364 0.23 +0.3 2,742,013 + Psyr_2364 0.24 -1.2 2,742,013 + Psyr_2364 0.24 -0.4 2,742,014 - Psyr_2364 0.24 -1.5 2,742,014 - Psyr_2364 0.24 -0.4 2,742,112 + Psyr_2364 0.35 +3.0 2,742,113 - Psyr_2364 0.36 +0.6 2,742,113 - Psyr_2364 0.36 -1.0 2,742,116 - Psyr_2364 0.36 +0.4 2,742,226 + Psyr_2364 0.49 -0.3 2,742,227 - Psyr_2364 0.49 +0.0 2,742,227 - Psyr_2364 0.49 +1.0 2,742,227 - Psyr_2364 0.49 +0.0 2,742,410 - Psyr_2364 0.71 +0.1
Or see this region's nucleotide sequence