Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2110

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2109 and Psyr_2110 are separated by 165 nucleotidesPsyr_2110 and Psyr_2111 are separated by 52 nucleotides Psyr_2109: Psyr_2109 - methyl-accepting chemotaxis sensory transducer, at 2,462,935 to 2,464,554 _2109 Psyr_2110: Psyr_2110 - diguanylate cyclase with PAS/PAC sensor, at 2,464,720 to 2,467,110 _2110 Psyr_2111: Psyr_2111 - Peptidase S13, D-Ala-D-Ala carboxypeptidase C, at 2,467,163 to 2,468,629 _2111 Position (kb) 2464 2465 2466 2467 2468Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2464.437 kb on + strandat 2464.552 kb on + strandat 2464.552 kb on + strandat 2464.552 kb on + strandat 2464.552 kb on + strandat 2464.553 kb on - strandat 2464.631 kb on + strandat 2464.631 kb on + strandat 2464.631 kb on + strandat 2464.632 kb on - strandat 2464.632 kb on - strandat 2464.647 kb on - strandat 2464.647 kb on - strandat 2464.656 kb on + strandat 2464.660 kb on + strandat 2464.660 kb on + strandat 2464.661 kb on - strandat 2464.661 kb on - strandat 2464.661 kb on - strandat 2464.661 kb on - strandat 2464.694 kb on + strandat 2464.695 kb on - strandat 2464.695 kb on - strandat 2464.695 kb on - strandat 2464.695 kb on - strandat 2464.720 kb on - strandat 2464.720 kb on - strandat 2464.822 kb on - strandat 2464.822 kb on - strandat 2464.822 kb on - strandat 2464.822 kb on - strandat 2464.822 kb on - strandat 2464.855 kb on + strandat 2464.855 kb on + strandat 2464.968 kb on + strand, within Psyr_2110at 2464.972 kb on + strand, within Psyr_2110at 2464.972 kb on + strand, within Psyr_2110at 2464.972 kb on + strand, within Psyr_2110at 2464.973 kb on - strand, within Psyr_2110at 2464.973 kb on - strand, within Psyr_2110at 2464.973 kb on - strand, within Psyr_2110at 2465.022 kb on - strand, within Psyr_2110at 2465.022 kb on - strand, within Psyr_2110at 2465.041 kb on + strand, within Psyr_2110at 2465.042 kb on - strand, within Psyr_2110at 2465.042 kb on - strand, within Psyr_2110at 2465.056 kb on - strand, within Psyr_2110at 2465.056 kb on - strand, within Psyr_2110at 2465.056 kb on - strand, within Psyr_2110at 2465.056 kb on - strand, within Psyr_2110at 2465.127 kb on - strand, within Psyr_2110at 2465.180 kb on - strand, within Psyr_2110at 2465.347 kb on + strand, within Psyr_2110at 2465.347 kb on + strand, within Psyr_2110at 2465.347 kb on + strand, within Psyr_2110at 2465.347 kb on + strand, within Psyr_2110at 2465.347 kb on + strand, within Psyr_2110at 2465.348 kb on - strand, within Psyr_2110at 2465.348 kb on - strand, within Psyr_2110at 2465.348 kb on - strand, within Psyr_2110at 2465.348 kb on - strand, within Psyr_2110at 2465.348 kb on - strand, within Psyr_2110at 2465.348 kb on - strand, within Psyr_2110at 2465.410 kb on + strand, within Psyr_2110at 2465.411 kb on - strand, within Psyr_2110at 2465.411 kb on - strand, within Psyr_2110at 2465.525 kb on - strand, within Psyr_2110at 2465.547 kb on - strand, within Psyr_2110at 2465.560 kb on + strand, within Psyr_2110at 2465.560 kb on + strand, within Psyr_2110at 2465.560 kb on + strand, within Psyr_2110at 2465.560 kb on + strand, within Psyr_2110at 2465.560 kb on + strand, within Psyr_2110at 2465.560 kb on + strand, within Psyr_2110at 2465.560 kb on + strand, within Psyr_2110at 2465.560 kb on + strand, within Psyr_2110at 2465.560 kb on + strand, within Psyr_2110at 2465.561 kb on - strand, within Psyr_2110at 2465.561 kb on - strand, within Psyr_2110at 2465.617 kb on - strand, within Psyr_2110at 2465.711 kb on - strand, within Psyr_2110at 2465.711 kb on - strand, within Psyr_2110at 2465.915 kb on - strand, within Psyr_2110at 2465.959 kb on + strand, within Psyr_2110at 2465.960 kb on - strand, within Psyr_2110at 2466.277 kb on + strand, within Psyr_2110at 2466.319 kb on + strand, within Psyr_2110at 2466.478 kb on + strand, within Psyr_2110at 2466.652 kb on + strand, within Psyr_2110at 2466.877 kb on - strandat 2466.913 kb on + strandat 2467.061 kb on - strandat 2467.792 kb on + strand, within Psyr_2111at 2467.836 kb on + strand, within Psyr_2111at 2467.841 kb on - strand, within Psyr_2111at 2467.841 kb on - strand, within Psyr_2111at 2467.841 kb on - strand, within Psyr_2111at 2467.863 kb on + strand, within Psyr_2111at 2467.863 kb on + strand, within Psyr_2111at 2467.864 kb on - strand, within Psyr_2111at 2467.864 kb on - strand, within Psyr_2111at 2467.864 kb on - strand, within Psyr_2111at 2467.864 kb on - strand, within Psyr_2111

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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2,464,437 + -0.0
2,464,552 + -0.6
2,464,552 + +1.9
2,464,552 + +0.7
2,464,552 + +0.1
2,464,553 - -0.7
2,464,631 + +1.3
2,464,631 + +0.2
2,464,631 + -0.3
2,464,632 - -0.2
2,464,632 - +0.5
2,464,647 - -0.5
2,464,647 - +0.4
2,464,656 + -0.5
2,464,660 + +1.6
2,464,660 + +0.3
2,464,661 - +0.7
2,464,661 - +0.6
2,464,661 - +3.6
2,464,661 - +0.7
2,464,694 + -0.9
2,464,695 - -0.4
2,464,695 - +0.7
2,464,695 - +0.0
2,464,695 - +0.3
2,464,720 - -1.6
2,464,720 - -1.3
2,464,822 - +0.1
2,464,822 - +1.4
2,464,822 - +0.4
2,464,822 - +0.1
2,464,822 - +0.2
2,464,855 + -0.4
2,464,855 + +0.6
2,464,968 + Psyr_2110 0.10 +0.3
2,464,972 + Psyr_2110 0.11 +0.0
2,464,972 + Psyr_2110 0.11 +0.4
2,464,972 + Psyr_2110 0.11 +0.5
2,464,973 - Psyr_2110 0.11 -1.7
2,464,973 - Psyr_2110 0.11 +0.4
2,464,973 - Psyr_2110 0.11 +0.0
2,465,022 - Psyr_2110 0.13 -0.8
2,465,022 - Psyr_2110 0.13 +1.5
2,465,041 + Psyr_2110 0.13 +0.1
2,465,042 - Psyr_2110 0.13 +0.8
2,465,042 - Psyr_2110 0.13 -0.3
2,465,056 - Psyr_2110 0.14 -0.9
2,465,056 - Psyr_2110 0.14 +0.2
2,465,056 - Psyr_2110 0.14 +1.0
2,465,056 - Psyr_2110 0.14 -0.5
2,465,127 - Psyr_2110 0.17 -2.0
2,465,180 - Psyr_2110 0.19 +0.8
2,465,347 + Psyr_2110 0.26 +0.2
2,465,347 + Psyr_2110 0.26 +0.8
2,465,347 + Psyr_2110 0.26 -0.9
2,465,347 + Psyr_2110 0.26 -2.3
2,465,347 + Psyr_2110 0.26 +0.9
2,465,348 - Psyr_2110 0.26 +0.4
2,465,348 - Psyr_2110 0.26 -0.1
2,465,348 - Psyr_2110 0.26 +0.9
2,465,348 - Psyr_2110 0.26 +0.7
2,465,348 - Psyr_2110 0.26 -0.6
2,465,348 - Psyr_2110 0.26 +0.7
2,465,410 + Psyr_2110 0.29 -1.1
2,465,411 - Psyr_2110 0.29 +0.2
2,465,411 - Psyr_2110 0.29 -0.2
2,465,525 - Psyr_2110 0.34 -0.4
2,465,547 - Psyr_2110 0.35 -0.1
2,465,560 + Psyr_2110 0.35 -0.6
2,465,560 + Psyr_2110 0.35 +0.9
2,465,560 + Psyr_2110 0.35 +2.0
2,465,560 + Psyr_2110 0.35 +0.3
2,465,560 + Psyr_2110 0.35 +1.0
2,465,560 + Psyr_2110 0.35 +2.0
2,465,560 + Psyr_2110 0.35 -0.2
2,465,560 + Psyr_2110 0.35 +0.6
2,465,560 + Psyr_2110 0.35 +0.2
2,465,561 - Psyr_2110 0.35 +1.3
2,465,561 - Psyr_2110 0.35 +0.1
2,465,617 - Psyr_2110 0.38 +0.5
2,465,711 - Psyr_2110 0.41 -0.5
2,465,711 - Psyr_2110 0.41 -0.7
2,465,915 - Psyr_2110 0.50 +0.7
2,465,959 + Psyr_2110 0.52 +0.3
2,465,960 - Psyr_2110 0.52 +0.9
2,466,277 + Psyr_2110 0.65 -1.2
2,466,319 + Psyr_2110 0.67 -0.4
2,466,478 + Psyr_2110 0.74 +1.0
2,466,652 + Psyr_2110 0.81 +0.5
2,466,877 - -0.6
2,466,913 + -0.7
2,467,061 - +0.3
2,467,792 + Psyr_2111 0.43 -0.8
2,467,836 + Psyr_2111 0.46 -0.1
2,467,841 - Psyr_2111 0.46 -0.7
2,467,841 - Psyr_2111 0.46 -1.9
2,467,841 - Psyr_2111 0.46 +0.3
2,467,863 + Psyr_2111 0.48 -0.2
2,467,863 + Psyr_2111 0.48 -0.2
2,467,864 - Psyr_2111 0.48 +0.5
2,467,864 - Psyr_2111 0.48 -1.6
2,467,864 - Psyr_2111 0.48 -0.4
2,467,864 - Psyr_2111 0.48 +0.0

Or see this region's nucleotide sequence