Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1968

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1967 and Psyr_1968 are separated by 347 nucleotidesPsyr_1968 and Psyr_1969 are separated by 7 nucleotides Psyr_1967: Psyr_1967 - Twin-arginine translocation pathway signal, at 2,279,123 to 2,280,757 _1967 Psyr_1968: Psyr_1968 - RND efflux system, outer membrane lipoprotein, NodT, at 2,281,105 to 2,282,493 _1968 Psyr_1969: Psyr_1969 - ABC transporter:Protein of unknown function DUF214, at 2,282,501 to 2,284,474 _1969 Position (kb) 2281 2282 2283Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2280.113 kb on + strand, within Psyr_1967at 2280.113 kb on + strand, within Psyr_1967at 2280.113 kb on + strand, within Psyr_1967at 2280.158 kb on - strand, within Psyr_1967at 2280.448 kb on - strand, within Psyr_1967at 2280.722 kb on + strandat 2280.723 kb on - strandat 2280.920 kb on + strandat 2281.140 kb on - strandat 2281.394 kb on + strand, within Psyr_1968at 2282.090 kb on + strand, within Psyr_1968at 2282.639 kb on - strandat 2282.938 kb on - strand, within Psyr_1969at 2283.033 kb on + strand, within Psyr_1969at 2283.033 kb on + strand, within Psyr_1969at 2283.034 kb on - strand, within Psyr_1969at 2283.034 kb on - strand, within Psyr_1969at 2283.180 kb on + strand, within Psyr_1969at 2283.181 kb on - strand, within Psyr_1969at 2283.283 kb on - strand, within Psyr_1969at 2283.283 kb on - strand, within Psyr_1969at 2283.345 kb on + strand, within Psyr_1969

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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2,280,113 + Psyr_1967 0.61 +0.2
2,280,113 + Psyr_1967 0.61 -0.3
2,280,113 + Psyr_1967 0.61 +0.8
2,280,158 - Psyr_1967 0.63 +0.2
2,280,448 - Psyr_1967 0.81 -0.0
2,280,722 + +1.8
2,280,723 - +0.9
2,280,920 + -0.4
2,281,140 - -1.3
2,281,394 + Psyr_1968 0.21 +1.5
2,282,090 + Psyr_1968 0.71 -1.7
2,282,639 - +0.0
2,282,938 - Psyr_1969 0.22 -2.0
2,283,033 + Psyr_1969 0.27 +0.2
2,283,033 + Psyr_1969 0.27 -1.8
2,283,034 - Psyr_1969 0.27 -2.9
2,283,034 - Psyr_1969 0.27 -2.0
2,283,180 + Psyr_1969 0.34 -0.9
2,283,181 - Psyr_1969 0.34 -1.7
2,283,283 - Psyr_1969 0.40 -2.7
2,283,283 - Psyr_1969 0.40 -1.8
2,283,345 + Psyr_1969 0.43 -0.6

Or see this region's nucleotide sequence