Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1968
Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Quercetin 360 ug/ml |
---|---|---|---|---|---|
remove | |||||
2,280,113 | + | Psyr_1967 | 0.61 | +0.2 | |
2,280,113 | + | Psyr_1967 | 0.61 | -0.3 | |
2,280,113 | + | Psyr_1967 | 0.61 | +0.8 | |
2,280,158 | - | Psyr_1967 | 0.63 | +0.2 | |
2,280,448 | - | Psyr_1967 | 0.81 | -0.0 | |
2,280,722 | + | +1.8 | |||
2,280,723 | - | +0.9 | |||
2,280,920 | + | -0.4 | |||
2,281,140 | - | -1.3 | |||
2,281,394 | + | Psyr_1968 | 0.21 | +1.5 | |
2,282,090 | + | Psyr_1968 | 0.71 | -1.7 | |
2,282,639 | - | +0.0 | |||
2,282,938 | - | Psyr_1969 | 0.22 | -2.0 | |
2,283,033 | + | Psyr_1969 | 0.27 | +0.2 | |
2,283,033 | + | Psyr_1969 | 0.27 | -1.8 | |
2,283,034 | - | Psyr_1969 | 0.27 | -2.9 | |
2,283,034 | - | Psyr_1969 | 0.27 | -2.0 | |
2,283,180 | + | Psyr_1969 | 0.34 | -0.9 | |
2,283,181 | - | Psyr_1969 | 0.34 | -1.7 | |
2,283,283 | - | Psyr_1969 | 0.40 | -2.7 | |
2,283,283 | - | Psyr_1969 | 0.40 | -1.8 | |
2,283,345 | + | Psyr_1969 | 0.43 | -0.6 |
Or see this region's nucleotide sequence