Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1700

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1699 and Psyr_1700 are separated by 170 nucleotidesPsyr_1700 and Psyr_1701 are separated by 27 nucleotides Psyr_1699: Psyr_1699 - Protein of unknown function DUF1329, at 1,906,466 to 1,907,821 _1699 Psyr_1700: Psyr_1700 - Glycosyl hydrolase, BNR repeat protein, at 1,907,992 to 1,909,101 _1700 Psyr_1701: Psyr_1701 - membrane protein, putative, at 1,909,129 to 1,911,519 _1701 Position (kb) 1907 1908 1909 1910Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1907.002 kb on + strand, within Psyr_1699at 1907.002 kb on + strand, within Psyr_1699at 1907.002 kb on + strand, within Psyr_1699at 1907.003 kb on - strand, within Psyr_1699at 1907.003 kb on - strand, within Psyr_1699at 1907.019 kb on + strand, within Psyr_1699at 1907.020 kb on - strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.079 kb on - strand, within Psyr_1699at 1907.079 kb on - strand, within Psyr_1699at 1907.123 kb on + strand, within Psyr_1699at 1907.123 kb on + strand, within Psyr_1699at 1907.123 kb on + strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.126 kb on + strand, within Psyr_1699at 1907.127 kb on - strand, within Psyr_1699at 1907.225 kb on + strand, within Psyr_1699at 1907.225 kb on + strand, within Psyr_1699at 1907.225 kb on + strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.383 kb on + strand, within Psyr_1699at 1907.383 kb on + strand, within Psyr_1699at 1907.384 kb on - strand, within Psyr_1699at 1907.422 kb on + strand, within Psyr_1699at 1907.422 kb on + strand, within Psyr_1699at 1907.422 kb on + strand, within Psyr_1699at 1907.422 kb on + strand, within Psyr_1699at 1907.422 kb on + strand, within Psyr_1699at 1907.423 kb on - strand, within Psyr_1699at 1907.427 kb on - strand, within Psyr_1699at 1907.436 kb on + strand, within Psyr_1699at 1907.436 kb on + strand, within Psyr_1699at 1907.436 kb on + strand, within Psyr_1699at 1907.437 kb on - strand, within Psyr_1699at 1907.437 kb on - strand, within Psyr_1699at 1907.437 kb on - strand, within Psyr_1699at 1907.466 kb on - strand, within Psyr_1699at 1907.468 kb on - strand, within Psyr_1699at 1907.491 kb on - strand, within Psyr_1699at 1907.534 kb on + strand, within Psyr_1699at 1907.552 kb on + strand, within Psyr_1699at 1907.552 kb on + strand, within Psyr_1699at 1907.633 kb on + strand, within Psyr_1699at 1907.634 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.649 kb on - strand, within Psyr_1699at 1907.858 kb on - strandat 1907.887 kb on - strandat 1907.887 kb on - strandat 1907.887 kb on - strandat 1907.896 kb on + strandat 1907.935 kb on - strandat 1907.949 kb on + strandat 1907.992 kb on - strandat 1908.032 kb on + strandat 1908.033 kb on - strandat 1908.035 kb on + strandat 1908.035 kb on + strandat 1908.036 kb on - strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.039 kb on - strandat 1908.039 kb on - strandat 1908.039 kb on - strandat 1908.088 kb on + strandat 1908.285 kb on + strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.781 kb on + strand, within Psyr_1700at 1908.782 kb on - strand, within Psyr_1700at 1909.043 kb on + strandat 1909.099 kb on + strandat 1909.100 kb on - strandat 1909.100 kb on - strandat 1909.100 kb on - strandat 1909.360 kb on - strandat 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.454 kb on - strand, within Psyr_1701at 1909.716 kb on - strand, within Psyr_1701at 1909.729 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.899 kb on + strand, within Psyr_1701

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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1,907,002 + Psyr_1699 0.40 -0.1
1,907,002 + Psyr_1699 0.40 +0.2
1,907,002 + Psyr_1699 0.40 +0.6
1,907,003 - Psyr_1699 0.40 +0.2
1,907,003 - Psyr_1699 0.40 +0.8
1,907,019 + Psyr_1699 0.41 -2.1
1,907,020 - Psyr_1699 0.41 +0.0
1,907,078 + Psyr_1699 0.45 +0.4
1,907,078 + Psyr_1699 0.45 -2.0
1,907,078 + Psyr_1699 0.45 +0.4
1,907,079 - Psyr_1699 0.45 -0.4
1,907,079 - Psyr_1699 0.45 +0.1
1,907,123 + Psyr_1699 0.48 -1.5
1,907,123 + Psyr_1699 0.48 -0.7
1,907,123 + Psyr_1699 0.48 -0.1
1,907,124 - Psyr_1699 0.49 +0.2
1,907,124 - Psyr_1699 0.49 -0.2
1,907,124 - Psyr_1699 0.49 -0.0
1,907,126 + Psyr_1699 0.49 -1.1
1,907,127 - Psyr_1699 0.49 -0.2
1,907,225 + Psyr_1699 0.56 -1.1
1,907,225 + Psyr_1699 0.56 -1.3
1,907,225 + Psyr_1699 0.56 -2.0
1,907,226 - Psyr_1699 0.56 +0.6
1,907,226 - Psyr_1699 0.56 -1.0
1,907,226 - Psyr_1699 0.56 -0.1
1,907,226 - Psyr_1699 0.56 -0.4
1,907,381 + Psyr_1699 0.67 +1.0
1,907,381 + Psyr_1699 0.67 +0.2
1,907,381 + Psyr_1699 0.67 -2.5
1,907,381 + Psyr_1699 0.67 -1.8
1,907,381 + Psyr_1699 0.67 -0.5
1,907,381 + Psyr_1699 0.67 -2.2
1,907,381 + Psyr_1699 0.67 -0.5
1,907,381 + Psyr_1699 0.67 +0.6
1,907,382 - Psyr_1699 0.68 -1.1
1,907,382 - Psyr_1699 0.68 +0.1
1,907,382 - Psyr_1699 0.68 -0.7
1,907,383 + Psyr_1699 0.68 +0.2
1,907,383 + Psyr_1699 0.68 +0.2
1,907,384 - Psyr_1699 0.68 -0.1
1,907,422 + Psyr_1699 0.71 -0.5
1,907,422 + Psyr_1699 0.71 -2.8
1,907,422 + Psyr_1699 0.71 -0.0
1,907,422 + Psyr_1699 0.71 +1.0
1,907,422 + Psyr_1699 0.71 -1.6
1,907,423 - Psyr_1699 0.71 +0.1
1,907,427 - Psyr_1699 0.71 -0.4
1,907,436 + Psyr_1699 0.72 +0.5
1,907,436 + Psyr_1699 0.72 -0.7
1,907,436 + Psyr_1699 0.72 -0.5
1,907,437 - Psyr_1699 0.72 -0.5
1,907,437 - Psyr_1699 0.72 -0.2
1,907,437 - Psyr_1699 0.72 +0.1
1,907,466 - Psyr_1699 0.74 -1.0
1,907,468 - Psyr_1699 0.74 -0.6
1,907,491 - Psyr_1699 0.76 +0.2
1,907,534 + Psyr_1699 0.79 +0.7
1,907,552 + Psyr_1699 0.80 -0.6
1,907,552 + Psyr_1699 0.80 +2.0
1,907,633 + Psyr_1699 0.86 -0.5
1,907,634 - Psyr_1699 0.86 -1.3
1,907,646 - Psyr_1699 0.87 +0.5
1,907,646 - Psyr_1699 0.87 -0.2
1,907,646 - Psyr_1699 0.87 -1.3
1,907,646 - Psyr_1699 0.87 -0.5
1,907,646 - Psyr_1699 0.87 +0.2
1,907,646 - Psyr_1699 0.87 +0.2
1,907,646 - Psyr_1699 0.87 +0.8
1,907,649 - Psyr_1699 0.87 +0.2
1,907,858 - -0.9
1,907,887 - +0.3
1,907,887 - -0.9
1,907,887 - +0.3
1,907,896 + -0.4
1,907,935 - +0.5
1,907,949 + -0.3
1,907,992 - +0.7
1,908,032 + +0.9
1,908,033 - +1.5
1,908,035 + +0.2
1,908,035 + -0.2
1,908,036 - -0.5
1,908,038 + -0.0
1,908,038 + +1.0
1,908,038 + -0.0
1,908,038 + +0.1
1,908,038 + +2.3
1,908,038 + -0.6
1,908,038 + +0.5
1,908,038 + +0.2
1,908,039 - -0.0
1,908,039 - +0.5
1,908,039 - -0.6
1,908,088 + -0.9
1,908,285 + Psyr_1700 0.26 -0.3
1,908,285 + Psyr_1700 0.26 +1.2
1,908,285 + Psyr_1700 0.26 -1.3
1,908,285 + Psyr_1700 0.26 +0.9
1,908,285 + Psyr_1700 0.26 +0.4
1,908,781 + Psyr_1700 0.71 +0.6
1,908,782 - Psyr_1700 0.71 +1.1
1,909,043 + -1.5
1,909,099 + -0.7
1,909,100 - +0.3
1,909,100 - -0.1
1,909,100 - -0.6
1,909,360 - +0.5
1,909,414 + Psyr_1701 0.12 +0.3
1,909,414 + Psyr_1701 0.12 -0.7
1,909,414 + Psyr_1701 0.12 +1.3
1,909,414 + Psyr_1701 0.12 +0.4
1,909,415 - Psyr_1701 0.12 +0.7
1,909,415 - Psyr_1701 0.12 +0.4
1,909,453 + Psyr_1701 0.14 -0.8
1,909,453 + Psyr_1701 0.14 +0.7
1,909,454 - Psyr_1701 0.14 +0.6
1,909,716 - Psyr_1701 0.25 -1.2
1,909,729 + Psyr_1701 0.25 +0.2
1,909,774 + Psyr_1701 0.27 +0.6
1,909,774 + Psyr_1701 0.27 -0.9
1,909,774 + Psyr_1701 0.27 +0.4
1,909,899 + Psyr_1701 0.32 +1.1

Or see this region's nucleotide sequence