Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0856 and Psyr_0857 overlap by 8 nucleotides Psyr_0857 and Psyr_0858 are separated by 10 nucleotides Psyr_0858 and Psyr_0859 are separated by 131 nucleotides Psyr_0859 and Psyr_0860 are separated by 56 nucleotides
Psyr_0856: Psyr_0856 - conserved hypothetical protein, at 976,419 to 977,225
_0856
Psyr_0857: Psyr_0857 - [SSU ribosomal protein S18P]-alanine acetyltransferase, at 977,218 to 977,670
_0857
Psyr_0858: Psyr_0858 - conserved hypothetical protein, at 977,681 to 978,088
_0858
Psyr_0859: Psyr_0859 - Carbonate dehydratase, at 978,220 to 978,858
_0859
Psyr_0860: Psyr_0860 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 978,915 to 980,591
_0860
Position (kb) 977
978
979 Strain fitness (log2 ratio) -2
-1
0
1
2 at 977.316 kb on + strand, within Psyr_0857 at 977.334 kb on - strand, within Psyr_0857 at 977.334 kb on - strand, within Psyr_0857 at 977.575 kb on + strand, within Psyr_0857 at 977.591 kb on + strand, within Psyr_0857 at 977.591 kb on + strand, within Psyr_0857 at 977.592 kb on - strand, within Psyr_0857 at 977.592 kb on - strand, within Psyr_0857 at 977.608 kb on + strand, within Psyr_0857 at 977.668 kb on + strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.776 kb on + strand, within Psyr_0858 at 977.963 kb on - strand, within Psyr_0858 at 978.231 kb on - strand at 978.231 kb on - strand at 978.231 kb on - strand at 978.231 kb on - strand at 978.231 kb on - strand at 978.231 kb on - strand at 978.272 kb on + strand at 978.467 kb on - strand, within Psyr_0859 at 978.479 kb on + strand, within Psyr_0859 at 978.479 kb on + strand, within Psyr_0859 at 978.479 kb on + strand, within Psyr_0859 at 978.480 kb on - strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.763 kb on + strand, within Psyr_0859 at 978.763 kb on + strand, within Psyr_0859 at 978.763 kb on + strand, within Psyr_0859 at 978.763 kb on + strand, within Psyr_0859 at 978.763 kb on + strand, within Psyr_0859 at 978.763 kb on + strand, within Psyr_0859 at 978.764 kb on - strand, within Psyr_0859 at 978.764 kb on - strand, within Psyr_0859 at 978.764 kb on - strand, within Psyr_0859
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 977,316 + Psyr_0857 0.22 -0.4 977,334 - Psyr_0857 0.26 -1.3 977,334 - Psyr_0857 0.26 -1.0 977,575 + Psyr_0857 0.79 +0.7 977,591 + Psyr_0857 0.82 -0.1 977,591 + Psyr_0857 0.82 -0.5 977,592 - Psyr_0857 0.83 +0.9 977,592 - Psyr_0857 0.83 -0.4 977,608 + Psyr_0857 0.86 -1.8 977,668 + +0.0 977,671 + +0.4 977,671 + -0.7 977,671 + +0.4 977,671 + -0.8 977,776 + Psyr_0858 0.23 +0.5 977,963 - Psyr_0858 0.69 +0.8 978,231 - -0.9 978,231 - -0.4 978,231 - +0.0 978,231 - -2.5 978,231 - -1.4 978,231 - +0.2 978,272 + +0.4 978,467 - Psyr_0859 0.39 -0.9 978,479 + Psyr_0859 0.41 +0.8 978,479 + Psyr_0859 0.41 +0.4 978,479 + Psyr_0859 0.41 +2.0 978,480 - Psyr_0859 0.41 -0.4 978,598 + Psyr_0859 0.59 -1.8 978,598 + Psyr_0859 0.59 +0.1 978,598 + Psyr_0859 0.59 +0.1 978,599 - Psyr_0859 0.59 -0.7 978,599 - Psyr_0859 0.59 -1.7 978,599 - Psyr_0859 0.59 -1.5 978,763 + Psyr_0859 0.85 -0.2 978,763 + Psyr_0859 0.85 -0.7 978,763 + Psyr_0859 0.85 -0.3 978,763 + Psyr_0859 0.85 -1.4 978,763 + Psyr_0859 0.85 -1.3 978,763 + Psyr_0859 0.85 +0.6 978,764 - Psyr_0859 0.85 -0.3 978,764 - Psyr_0859 0.85 +0.6 978,764 - Psyr_0859 0.85 +0.5
Or see this region's nucleotide sequence