Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0664 and Psyr_0665 are separated by 4 nucleotides Psyr_0665 and Psyr_0666 overlap by 4 nucleotides Psyr_0666 and Psyr_0667 are separated by 0 nucleotides
Psyr_0664: Psyr_0664 - ABC transporter, at 752,808 to 753,599
_0664
Psyr_0665: Psyr_0665 - transport system permease protein, at 753,604 to 754,572
_0665
Psyr_0666: Psyr_0666 - transport system permease protein, at 754,569 to 755,558
_0666
Psyr_0667: Psyr_0667 - Periplasmic binding protein, at 755,559 to 756,479
_0667
Position (kb) 754
755
756 Strain fitness (log2 ratio) -2
-1
0
1 at 753.593 kb on + strand at 753.594 kb on - strand at 753.594 kb on - strand at 753.594 kb on - strand at 753.765 kb on - strand, within Psyr_0665 at 753.765 kb on - strand, within Psyr_0665 at 753.895 kb on - strand, within Psyr_0665 at 754.181 kb on + strand, within Psyr_0665 at 754.181 kb on + strand, within Psyr_0665 at 754.181 kb on + strand, within Psyr_0665 at 754.181 kb on + strand, within Psyr_0665 at 754.181 kb on + strand, within Psyr_0665 at 754.181 kb on + strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.182 kb on - strand, within Psyr_0665 at 754.914 kb on - strand, within Psyr_0666 at 755.056 kb on - strand, within Psyr_0666 at 755.407 kb on + strand, within Psyr_0666 at 755.407 kb on + strand, within Psyr_0666 at 755.407 kb on + strand, within Psyr_0666 at 755.408 kb on - strand, within Psyr_0666 at 755.408 kb on - strand, within Psyr_0666 at 755.560 kb on + strand at 755.561 kb on - strand at 755.753 kb on - strand, within Psyr_0667 at 755.835 kb on + strand, within Psyr_0667 at 755.835 kb on + strand, within Psyr_0667 at 755.836 kb on - strand, within Psyr_0667 at 755.882 kb on - strand, within Psyr_0667 at 755.882 kb on - strand, within Psyr_0667 at 755.882 kb on - strand, within Psyr_0667 at 756.068 kb on - strand, within Psyr_0667 at 756.068 kb on - strand, within Psyr_0667 at 756.124 kb on + strand, within Psyr_0667 at 756.124 kb on + strand, within Psyr_0667 at 756.124 kb on + strand, within Psyr_0667 at 756.125 kb on - strand, within Psyr_0667 at 756.125 kb on - strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.192 kb on - strand, within Psyr_0667 at 756.213 kb on + strand, within Psyr_0667 at 756.214 kb on - strand, within Psyr_0667
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 753,593 + +0.1 753,594 - -0.7 753,594 - -1.0 753,594 - +0.3 753,765 - Psyr_0665 0.17 -0.3 753,765 - Psyr_0665 0.17 -0.1 753,895 - Psyr_0665 0.30 -0.1 754,181 + Psyr_0665 0.60 +0.5 754,181 + Psyr_0665 0.60 +0.2 754,181 + Psyr_0665 0.60 +0.4 754,181 + Psyr_0665 0.60 -1.4 754,181 + Psyr_0665 0.60 -0.7 754,181 + Psyr_0665 0.60 +0.1 754,182 - Psyr_0665 0.60 +0.1 754,182 - Psyr_0665 0.60 -0.2 754,182 - Psyr_0665 0.60 -0.6 754,182 - Psyr_0665 0.60 -1.1 754,182 - Psyr_0665 0.60 +0.9 754,182 - Psyr_0665 0.60 +0.4 754,182 - Psyr_0665 0.60 -2.6 754,182 - Psyr_0665 0.60 -0.1 754,182 - Psyr_0665 0.60 +0.1 754,182 - Psyr_0665 0.60 -0.0 754,182 - Psyr_0665 0.60 +0.0 754,182 - Psyr_0665 0.60 +0.1 754,182 - Psyr_0665 0.60 +1.6 754,914 - Psyr_0666 0.35 -0.1 755,056 - Psyr_0666 0.49 -0.3 755,407 + Psyr_0666 0.85 -0.8 755,407 + Psyr_0666 0.85 -0.9 755,407 + Psyr_0666 0.85 +0.7 755,408 - Psyr_0666 0.85 +1.1 755,408 - Psyr_0666 0.85 -0.3 755,560 + -1.2 755,561 - -0.9 755,753 - Psyr_0667 0.21 +0.1 755,835 + Psyr_0667 0.30 -0.2 755,835 + Psyr_0667 0.30 +0.8 755,836 - Psyr_0667 0.30 -0.9 755,882 - Psyr_0667 0.35 +0.4 755,882 - Psyr_0667 0.35 -0.4 755,882 - Psyr_0667 0.35 +1.6 756,068 - Psyr_0667 0.55 +0.9 756,068 - Psyr_0667 0.55 +1.0 756,124 + Psyr_0667 0.61 -0.7 756,124 + Psyr_0667 0.61 +0.6 756,124 + Psyr_0667 0.61 -0.3 756,125 - Psyr_0667 0.61 -0.5 756,125 - Psyr_0667 0.61 -1.2 756,189 + Psyr_0667 0.68 +0.1 756,189 + Psyr_0667 0.68 +0.2 756,189 + Psyr_0667 0.68 -0.1 756,189 + Psyr_0667 0.68 -0.1 756,189 + Psyr_0667 0.68 +0.2 756,189 + Psyr_0667 0.68 -0.9 756,190 - Psyr_0667 0.69 +1.3 756,190 - Psyr_0667 0.69 +0.8 756,190 - Psyr_0667 0.69 -0.5 756,190 - Psyr_0667 0.69 +0.6 756,190 - Psyr_0667 0.69 -0.3 756,190 - Psyr_0667 0.69 -0.1 756,192 - Psyr_0667 0.69 +0.6 756,213 + Psyr_0667 0.71 -0.6 756,214 - Psyr_0667 0.71 +0.5
Or see this region's nucleotide sequence