Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0396

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0395 and Psyr_0396 are separated by 367 nucleotidesPsyr_0396 and Psyr_0397 are separated by 1 nucleotides Psyr_0395: Psyr_0395 - HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B, at 422,031 to 422,609 _0395 Psyr_0396: Psyr_0396 - Sporulation related protein, at 422,977 to 423,672 _0396 Psyr_0397: Psyr_0397 - arginyl-tRNA synthetase, at 423,674 to 425,413 _0397 Position (kb) 422 423 424Strain fitness (log2 ratio) -3 -2 -1 0 1at 422.446 kb on + strand, within Psyr_0395at 422.446 kb on + strand, within Psyr_0395at 422.457 kb on + strand, within Psyr_0395at 422.528 kb on + strand, within Psyr_0395at 422.609 kb on + strandat 422.627 kb on + strandat 422.627 kb on + strandat 422.628 kb on - strandat 422.666 kb on - strandat 422.666 kb on - strandat 422.666 kb on - strandat 422.774 kb on + strandat 422.775 kb on - strandat 422.842 kb on - strandat 422.900 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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422,446 + Psyr_0395 0.72 -0.8
422,446 + Psyr_0395 0.72 +0.3
422,457 + Psyr_0395 0.74 +1.1
422,528 + Psyr_0395 0.86 -0.4
422,609 + -0.4
422,627 + -0.6
422,627 + +0.3
422,628 - +0.9
422,666 - -0.0
422,666 - -3.3
422,666 - -0.2
422,774 + +0.5
422,775 - -1.3
422,842 - -0.1
422,900 + -0.3

Or see this region's nucleotide sequence