Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0284 and Psyr_0285 are separated by 69 nucleotides Psyr_0285 and Psyr_0286 are separated by 247 nucleotides Psyr_0286 and Psyr_0287 are separated by 120 nucleotides
Psyr_0284: Psyr_0284 - Electron transport protein SCO1/SenC, at 302,686 to 303,318
_0284
Psyr_0285: Psyr_0285 - Cytochrome c oxidase assembly protein CtaG/Cox11, at 303,388 to 303,879
_0285
Psyr_0286: Psyr_0286 - conserved hypothetical protein, at 304,127 to 304,777
_0286
Psyr_0287: Psyr_0287 - Sulphate transporter, at 304,898 to 306,430
_0287
Position (kb) 304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.367 kb on + strand at 303.383 kb on + strand at 303.384 kb on - strand at 303.389 kb on + strand at 303.390 kb on - strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.415 kb on - strand at 303.417 kb on - strand at 303.417 kb on - strand at 303.417 kb on - strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.437 kb on - strand at 303.437 kb on - strand at 303.437 kb on - strand at 303.678 kb on - strand, within Psyr_0285 at 303.785 kb on + strand, within Psyr_0285 at 303.786 kb on - strand, within Psyr_0285 at 303.812 kb on - strand, within Psyr_0285 at 303.826 kb on + strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.830 kb on - strand at 303.830 kb on - strand at 303.830 kb on - strand at 303.830 kb on - strand at 303.830 kb on - strand at 303.897 kb on - strand at 303.897 kb on - strand at 303.997 kb on + strand at 303.998 kb on - strand at 304.030 kb on - strand at 304.053 kb on + strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.067 kb on - strand at 304.071 kb on + strand at 304.072 kb on - strand at 304.155 kb on + strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.292 kb on + strand, within Psyr_0286 at 304.293 kb on - strand, within Psyr_0286 at 304.293 kb on - strand, within Psyr_0286 at 304.293 kb on - strand, within Psyr_0286 at 304.365 kb on + strand, within Psyr_0286 at 304.366 kb on - strand, within Psyr_0286 at 304.460 kb on + strand, within Psyr_0286 at 304.460 kb on + strand, within Psyr_0286 at 304.461 kb on - strand, within Psyr_0286 at 304.461 kb on - strand, within Psyr_0286 at 304.461 kb on - strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.537 kb on + strand, within Psyr_0286 at 304.840 kb on - strand at 304.882 kb on - strand at 304.882 kb on - strand at 304.933 kb on - strand at 304.933 kb on - strand at 305.049 kb on + strand at 305.049 kb on + strand at 305.049 kb on + strand at 305.049 kb on + strand at 305.050 kb on - strand at 305.050 kb on - strand at 305.255 kb on + strand, within Psyr_0287 at 305.256 kb on - strand, within Psyr_0287 at 305.256 kb on - strand, within Psyr_0287 at 305.304 kb on + strand, within Psyr_0287 at 305.304 kb on + strand, within Psyr_0287 at 305.304 kb on + strand, within Psyr_0287 at 305.304 kb on + strand, within Psyr_0287 at 305.305 kb on - strand, within Psyr_0287 at 305.305 kb on - strand, within Psyr_0287 at 305.305 kb on - strand, within Psyr_0287 at 305.305 kb on - strand, within Psyr_0287 at 305.379 kb on + strand, within Psyr_0287 at 305.379 kb on + strand, within Psyr_0287 at 305.380 kb on - strand, within Psyr_0287 at 305.569 kb on + strand, within Psyr_0287 at 305.569 kb on + strand, within Psyr_0287 at 305.570 kb on - strand, within Psyr_0287 at 305.570 kb on - strand, within Psyr_0287 at 305.570 kb on - strand, within Psyr_0287
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 303,365 + +0.0 303,365 + +0.5 303,365 + -3.0 303,365 + -0.9 303,365 + -1.1 303,365 + -0.6 303,365 + -1.0 303,365 + -2.9 303,365 + +0.4 303,365 + +0.6 303,365 + +1.2 303,365 + +1.2 303,365 + +0.3 303,366 - +0.2 303,366 - +0.3 303,366 - -1.1 303,366 - -1.5 303,366 - +0.2 303,366 - +0.0 303,366 - -0.6 303,366 - -0.2 303,366 - -0.4 303,366 - +0.3 303,367 + +1.4 303,383 + -0.3 303,384 - -0.3 303,389 + -0.6 303,390 - +0.4 303,414 + -0.4 303,414 + -0.7 303,414 + -0.7 303,414 + -0.2 303,414 + +0.4 303,415 - -3.3 303,417 - -0.5 303,417 - -1.0 303,417 - +0.3 303,436 + -0.3 303,436 + +1.1 303,437 - -0.3 303,437 - +0.2 303,437 - +0.0 303,678 - Psyr_0285 0.59 +1.6 303,785 + Psyr_0285 0.81 +0.2 303,786 - Psyr_0285 0.81 +0.4 303,812 - Psyr_0285 0.86 -1.2 303,826 + Psyr_0285 0.89 -0.6 303,827 - Psyr_0285 0.89 +1.0 303,827 - Psyr_0285 0.89 +0.7 303,827 - Psyr_0285 0.89 -0.1 303,827 - Psyr_0285 0.89 -0.5 303,827 - Psyr_0285 0.89 +0.8 303,829 + Psyr_0285 0.90 +0.7 303,829 + Psyr_0285 0.90 -0.9 303,829 + Psyr_0285 0.90 +0.3 303,829 + Psyr_0285 0.90 +1.2 303,830 - +2.5 303,830 - -0.2 303,830 - +1.4 303,830 - -0.8 303,830 - -0.5 303,897 - -0.4 303,897 - -2.6 303,997 + -0.8 303,998 - +0.5 304,030 - +0.1 304,053 + +0.5 304,057 + +0.5 304,057 + -0.2 304,057 + -0.6 304,067 - -0.1 304,071 + -0.9 304,072 - -1.7 304,155 + +0.9 304,156 - +0.3 304,156 - +0.5 304,156 - +0.6 304,156 - +0.1 304,161 + -0.5 304,161 + +0.5 304,161 + -0.4 304,292 + Psyr_0286 0.25 +0.8 304,293 - Psyr_0286 0.25 +0.8 304,293 - Psyr_0286 0.25 -0.3 304,293 - Psyr_0286 0.25 -0.4 304,365 + Psyr_0286 0.37 -1.2 304,366 - Psyr_0286 0.37 +0.6 304,460 + Psyr_0286 0.51 -0.2 304,460 + Psyr_0286 0.51 -3.5 304,461 - Psyr_0286 0.51 +1.3 304,461 - Psyr_0286 0.51 -1.5 304,461 - Psyr_0286 0.51 +0.8 304,499 + Psyr_0286 0.57 -0.7 304,499 + Psyr_0286 0.57 -1.4 304,499 + Psyr_0286 0.57 +0.2 304,499 + Psyr_0286 0.57 -1.0 304,499 + Psyr_0286 0.57 +0.1 304,499 + Psyr_0286 0.57 +0.6 304,499 + Psyr_0286 0.57 +0.2 304,500 - Psyr_0286 0.57 -0.2 304,500 - Psyr_0286 0.57 -0.1 304,500 - Psyr_0286 0.57 -0.1 304,500 - Psyr_0286 0.57 +0.7 304,500 - Psyr_0286 0.57 -0.9 304,537 + Psyr_0286 0.63 -0.7 304,840 - -1.3 304,882 - -0.3 304,882 - -0.5 304,933 - +2.0 304,933 - -0.0 305,049 + +0.4 305,049 + +1.9 305,049 + -2.7 305,049 + -0.2 305,050 - -0.1 305,050 - -0.0 305,255 + Psyr_0287 0.23 -0.3 305,256 - Psyr_0287 0.23 -0.3 305,256 - Psyr_0287 0.23 -0.7 305,304 + Psyr_0287 0.26 +0.3 305,304 + Psyr_0287 0.26 +0.8 305,304 + Psyr_0287 0.26 -0.8 305,304 + Psyr_0287 0.26 +0.2 305,305 - Psyr_0287 0.27 +1.2 305,305 - Psyr_0287 0.27 +0.4 305,305 - Psyr_0287 0.27 +1.2 305,305 - Psyr_0287 0.27 +0.4 305,379 + Psyr_0287 0.31 +0.7 305,379 + Psyr_0287 0.31 +0.7 305,380 - Psyr_0287 0.31 -0.6 305,569 + Psyr_0287 0.44 -1.1 305,569 + Psyr_0287 0.44 +0.7 305,570 - Psyr_0287 0.44 +1.4 305,570 - Psyr_0287 0.44 +0.1 305,570 - Psyr_0287 0.44 +1.2
Or see this region's nucleotide sequence