Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0202 and Psyr_0203 are separated by 92 nucleotides Psyr_0203 and Psyr_0204 overlap by 4 nucleotides Psyr_0204 and Psyr_0205 are separated by 3 nucleotides
Psyr_0202: Psyr_0202 - transcriptional regulator, LysR family, at 217,547 to 218,470
_0202
Psyr_0203: Psyr_0203 - outer membrane transport energization protein TonB, at 218,563 to 219,309
_0203
Psyr_0204: Psyr_0204 - outer membrane transport energization protein ExbD, at 219,306 to 219,731
_0204
Psyr_0205: Psyr_0205 - outer membrane transport energization protein ExbB, at 219,735 to 220,697
_0205
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 217.802 kb on + strand, within Psyr_0202 at 217.802 kb on + strand, within Psyr_0202 at 217.802 kb on + strand, within Psyr_0202 at 217.802 kb on + strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 218.103 kb on + strand, within Psyr_0202 at 218.103 kb on + strand, within Psyr_0202 at 218.103 kb on + strand, within Psyr_0202 at 218.103 kb on + strand, within Psyr_0202 at 218.104 kb on - strand, within Psyr_0202 at 218.104 kb on - strand, within Psyr_0202 at 218.104 kb on - strand, within Psyr_0202 at 218.104 kb on - strand, within Psyr_0202 at 218.161 kb on - strand, within Psyr_0202 at 218.175 kb on + strand, within Psyr_0202 at 218.176 kb on - strand, within Psyr_0202 at 218.176 kb on - strand, within Psyr_0202 at 218.448 kb on + strand at 218.448 kb on + strand at 218.448 kb on + strand at 218.449 kb on - strand at 218.461 kb on + strand at 218.461 kb on + strand at 218.461 kb on + strand at 218.462 kb on - strand at 218.470 kb on + strand at 218.471 kb on - strand at 218.471 kb on - strand at 218.538 kb on + strand at 218.538 kb on + strand at 218.539 kb on - strand at 218.543 kb on - strand at 218.557 kb on + strand at 219.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 217,802 + Psyr_0202 0.28 -1.7 217,802 + Psyr_0202 0.28 -2.3 217,802 + Psyr_0202 0.28 -1.0 217,802 + Psyr_0202 0.28 +0.7 217,803 - Psyr_0202 0.28 -1.1 217,803 - Psyr_0202 0.28 -1.3 217,803 - Psyr_0202 0.28 -1.2 217,803 - Psyr_0202 0.28 +1.2 217,803 - Psyr_0202 0.28 -0.9 218,103 + Psyr_0202 0.60 -0.0 218,103 + Psyr_0202 0.60 -1.1 218,103 + Psyr_0202 0.60 -1.1 218,103 + Psyr_0202 0.60 -0.1 218,104 - Psyr_0202 0.60 -2.7 218,104 - Psyr_0202 0.60 -1.2 218,104 - Psyr_0202 0.60 -0.4 218,104 - Psyr_0202 0.60 -0.5 218,161 - Psyr_0202 0.66 -3.1 218,175 + Psyr_0202 0.68 -2.0 218,176 - Psyr_0202 0.68 +0.2 218,176 - Psyr_0202 0.68 +0.3 218,448 + -2.6 218,448 + +0.0 218,448 + -1.3 218,449 - -2.9 218,461 + -2.5 218,461 + -0.9 218,461 + -1.3 218,462 - -2.3 218,470 + -1.4 218,471 - -1.1 218,471 - -0.3 218,538 + -1.5 218,538 + -0.6 218,539 - +0.7 218,543 - -0.2 218,557 + -1.6 219,334 - -1.2
Or see this region's nucleotide sequence