Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4287 and PP_4288 are separated by 49 nucleotides PP_4288 and PP_4289 are separated by 44 nucleotides PP_4289 and PP_4290 are separated by 186 nucleotides
PP_4287: PP_4287 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 4,878,278 to 4,878,793
_4287
PP_4288: PP_4288 - ureidoglycolate lyase, at 4,878,843 to 4,879,346
_4288
PP_4289: PP_4289 - conserved membrane protein of unknown function, at 4,879,391 to 4,880,731
_4289
PP_4290: PP_4290 - uric acid permease, at 4,880,918 to 4,882,273
_4290
Position (kb) 4879
4880
4881 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4878.626 kb on + strand, within PP_4287 at 4878.626 kb on + strand, within PP_4287 at 4878.627 kb on - strand, within PP_4287 at 4878.627 kb on - strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.791 kb on + strand at 4878.792 kb on - strand at 4878.792 kb on - strand at 4878.792 kb on - strand at 4878.827 kb on + strand at 4878.828 kb on - strand at 4878.828 kb on - strand at 4878.828 kb on - strand at 4878.828 kb on - strand at 4878.836 kb on + strand at 4878.836 kb on + strand at 4878.837 kb on - strand at 4878.837 kb on - strand at 4878.854 kb on + strand at 4878.855 kb on - strand at 4878.855 kb on - strand at 4879.150 kb on + strand, within PP_4288 at 4879.178 kb on + strand, within PP_4288 at 4879.179 kb on - strand, within PP_4288 at 4879.196 kb on + strand, within PP_4288 at 4879.196 kb on + strand, within PP_4288 at 4879.200 kb on + strand, within PP_4288 at 4879.302 kb on + strand at 4879.302 kb on + strand at 4879.302 kb on + strand at 4879.302 kb on + strand at 4879.302 kb on + strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.345 kb on - strand at 4879.383 kb on + strand at 4879.383 kb on + strand at 4879.383 kb on + strand at 4879.383 kb on + strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.478 kb on + strand at 4879.479 kb on - strand at 4879.564 kb on + strand, within PP_4289 at 4879.564 kb on + strand, within PP_4289 at 4879.564 kb on + strand, within PP_4289 at 4879.564 kb on + strand, within PP_4289 at 4879.565 kb on - strand, within PP_4289 at 4879.565 kb on - strand, within PP_4289 at 4879.568 kb on + strand, within PP_4289 at 4879.569 kb on - strand, within PP_4289 at 4879.583 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.641 kb on - strand, within PP_4289 at 4879.641 kb on - strand, within PP_4289 at 4879.641 kb on - strand, within PP_4289 at 4879.686 kb on - strand, within PP_4289 at 4879.703 kb on + strand, within PP_4289 at 4879.787 kb on + strand, within PP_4289 at 4879.787 kb on + strand, within PP_4289 at 4879.788 kb on - strand, within PP_4289 at 4879.788 kb on - strand, within PP_4289 at 4880.066 kb on + strand, within PP_4289 at 4880.067 kb on - strand, within PP_4289 at 4880.067 kb on - strand, within PP_4289 at 4880.120 kb on + strand, within PP_4289 at 4880.121 kb on - strand, within PP_4289 at 4880.132 kb on + strand, within PP_4289 at 4880.133 kb on - strand, within PP_4289 at 4880.133 kb on - strand, within PP_4289 at 4880.187 kb on - strand, within PP_4289 at 4880.217 kb on - strand, within PP_4289 at 4880.217 kb on - strand, within PP_4289 at 4880.217 kb on - strand, within PP_4289 at 4880.270 kb on - strand, within PP_4289 at 4880.293 kb on - strand, within PP_4289 at 4880.324 kb on + strand, within PP_4289 at 4880.836 kb on + strand at 4880.836 kb on + strand at 4880.939 kb on + strand at 4880.939 kb on + strand at 4880.939 kb on + strand at 4880.939 kb on + strand at 4880.939 kb on + strand at 4880.939 kb on + strand at 4880.940 kb on - strand at 4880.940 kb on - strand at 4880.942 kb on - strand at 4880.942 kb on - strand at 4881.020 kb on + strand at 4881.020 kb on + strand at 4881.020 kb on + strand at 4881.021 kb on - strand at 4881.021 kb on - strand at 4881.021 kb on - strand at 4881.021 kb on - strand at 4881.443 kb on + strand, within PP_4290 at 4881.444 kb on - strand, within PP_4290 at 4881.444 kb on - strand, within PP_4290 at 4881.548 kb on + strand, within PP_4290 at 4881.548 kb on + strand, within PP_4290 at 4881.548 kb on + strand, within PP_4290 at 4881.548 kb on + strand, within PP_4290 at 4881.548 kb on + strand, within PP_4290 at 4881.681 kb on + strand, within PP_4290
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,878,626 + PP_4287 0.67 -1.2 4,878,626 + PP_4287 0.67 -0.4 4,878,627 - PP_4287 0.68 +0.6 4,878,627 - PP_4287 0.68 +0.8 4,878,628 + PP_4287 0.68 +0.2 4,878,628 + PP_4287 0.68 +0.1 4,878,628 + PP_4287 0.68 -1.1 4,878,628 + PP_4287 0.68 -1.1 4,878,628 + PP_4287 0.68 -0.6 4,878,791 + +0.0 4,878,792 - +0.4 4,878,792 - +0.7 4,878,792 - -0.7 4,878,827 + -0.1 4,878,828 - +1.0 4,878,828 - +0.8 4,878,828 - -0.4 4,878,828 - +1.0 4,878,836 + +0.4 4,878,836 + -0.3 4,878,837 - +0.1 4,878,837 - +0.9 4,878,854 + +0.3 4,878,855 - -0.1 4,878,855 - +0.3 4,879,150 + PP_4288 0.61 -0.7 4,879,178 + PP_4288 0.66 +0.3 4,879,179 - PP_4288 0.67 +0.5 4,879,196 + PP_4288 0.70 +0.1 4,879,196 + PP_4288 0.70 -0.6 4,879,200 + PP_4288 0.71 -1.1 4,879,302 + -0.9 4,879,302 + -0.1 4,879,302 + -0.5 4,879,302 + -0.1 4,879,302 + -1.0 4,879,303 - +0.2 4,879,303 - +0.2 4,879,303 - +0.7 4,879,303 - +0.3 4,879,303 - +0.7 4,879,303 - +0.1 4,879,345 - +0.1 4,879,383 + +0.4 4,879,383 + +0.4 4,879,383 + +1.8 4,879,383 + +1.1 4,879,384 - +1.3 4,879,384 - +0.4 4,879,384 - -0.3 4,879,384 - +0.6 4,879,384 - +1.0 4,879,384 - +0.8 4,879,384 - +1.0 4,879,384 - +1.0 4,879,384 - +0.8 4,879,384 - +0.0 4,879,387 + -0.3 4,879,387 + +0.1 4,879,387 + +0.6 4,879,387 + +0.1 4,879,387 + +1.7 4,879,387 + +1.6 4,879,387 + -0.0 4,879,387 + -0.6 4,879,387 + +1.1 4,879,387 + +0.3 4,879,387 + +0.7 4,879,387 + +3.5 4,879,387 + +0.4 4,879,388 - +1.1 4,879,388 - -0.2 4,879,388 - +0.7 4,879,388 - +0.8 4,879,388 - -0.0 4,879,388 - +0.5 4,879,388 - +1.1 4,879,388 - +1.1 4,879,388 - +0.6 4,879,388 - +0.3 4,879,388 - +1.1 4,879,388 - +0.7 4,879,388 - +0.5 4,879,478 + +0.5 4,879,479 - +0.7 4,879,564 + PP_4289 0.13 +0.6 4,879,564 + PP_4289 0.13 +0.4 4,879,564 + PP_4289 0.13 -0.2 4,879,564 + PP_4289 0.13 -0.4 4,879,565 - PP_4289 0.13 +0.4 4,879,565 - PP_4289 0.13 -0.5 4,879,568 + PP_4289 0.13 +0.3 4,879,569 - PP_4289 0.13 +0.1 4,879,583 + PP_4289 0.14 +1.3 4,879,640 + PP_4289 0.19 +0.3 4,879,640 + PP_4289 0.19 +0.3 4,879,640 + PP_4289 0.19 +0.9 4,879,640 + PP_4289 0.19 +1.0 4,879,640 + PP_4289 0.19 +0.4 4,879,641 - PP_4289 0.19 +1.0 4,879,641 - PP_4289 0.19 +0.0 4,879,641 - PP_4289 0.19 +0.2 4,879,686 - PP_4289 0.22 +0.6 4,879,703 + PP_4289 0.23 +0.1 4,879,787 + PP_4289 0.30 +1.3 4,879,787 + PP_4289 0.30 +0.8 4,879,788 - PP_4289 0.30 +0.9 4,879,788 - PP_4289 0.30 +0.2 4,880,066 + PP_4289 0.50 +0.6 4,880,067 - PP_4289 0.50 +0.7 4,880,067 - PP_4289 0.50 +0.7 4,880,120 + PP_4289 0.54 +1.2 4,880,121 - PP_4289 0.54 +0.5 4,880,132 + PP_4289 0.55 +0.4 4,880,133 - PP_4289 0.55 +0.2 4,880,133 - PP_4289 0.55 +0.7 4,880,187 - PP_4289 0.59 +0.7 4,880,217 - PP_4289 0.62 +0.7 4,880,217 - PP_4289 0.62 +0.2 4,880,217 - PP_4289 0.62 -0.3 4,880,270 - PP_4289 0.66 -2.3 4,880,293 - PP_4289 0.67 +0.5 4,880,324 + PP_4289 0.70 +0.9 4,880,836 + -0.2 4,880,836 + -0.2 4,880,939 + -0.6 4,880,939 + +0.1 4,880,939 + -0.0 4,880,939 + -0.4 4,880,939 + +0.6 4,880,939 + -0.9 4,880,940 - -0.2 4,880,940 - -0.2 4,880,942 - -0.1 4,880,942 - -0.5 4,881,020 + +0.3 4,881,020 + +0.2 4,881,020 + -0.6 4,881,021 - +0.3 4,881,021 - -0.3 4,881,021 - +0.0 4,881,021 - +0.1 4,881,443 + PP_4290 0.39 -0.6 4,881,444 - PP_4290 0.39 -1.2 4,881,444 - PP_4290 0.39 +0.6 4,881,548 + PP_4290 0.46 +0.2 4,881,548 + PP_4290 0.46 +1.8 4,881,548 + PP_4290 0.46 -0.6 4,881,548 + PP_4290 0.46 +0.1 4,881,548 + PP_4290 0.46 -0.3 4,881,681 + PP_4290 0.56 +0.1
Or see this region's nucleotide sequence