Experiment: KB with Novobiocin 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4988 and Psyr_4989 overlap by 13 nucleotides Psyr_4989 and Psyr_4990 are separated by 246 nucleotides Psyr_4990 and Psyr_4991 are separated by 7 nucleotides Psyr_4991 and Psyr_4992 are separated by 439 nucleotides
Psyr_4988: Psyr_4988 - YD repeat protein, at 5,916,253 to 5,917,695
_4988
Psyr_4989: Psyr_4989 - hypothetical protein, at 5,917,683 to 5,918,153
_4989
Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003
_4990
Psyr_4991: Psyr_4991 - hypothetical protein, at 5,921,011 to 5,921,331
_4991
Psyr_4992: Psyr_4992 - YD repeat protein, at 5,921,771 to 5,923,126
_4992
Position (kb) 5918
5919
5920
5921
5922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5917.423 kb on + strand, within Psyr_4988 at 5917.424 kb on - strand, within Psyr_4988 at 5917.424 kb on - strand, within Psyr_4988 at 5917.488 kb on - strand, within Psyr_4988 at 5917.516 kb on - strand, within Psyr_4988 at 5917.542 kb on + strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.549 kb on - strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.551 kb on - strand at 5917.551 kb on - strand at 5917.551 kb on - strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.578 kb on - strand at 5917.578 kb on - strand at 5917.578 kb on - strand at 5917.650 kb on + strand at 5917.651 kb on - strand at 5917.651 kb on - strand at 5917.659 kb on - strand at 5917.659 kb on - strand at 5917.659 kb on - strand at 5917.662 kb on + strand at 5917.663 kb on - strand at 5917.737 kb on + strand, within Psyr_4989 at 5917.738 kb on - strand, within Psyr_4989 at 5917.738 kb on - strand, within Psyr_4989 at 5917.766 kb on + strand, within Psyr_4989 at 5917.766 kb on + strand, within Psyr_4989 at 5917.824 kb on - strand, within Psyr_4989 at 5917.855 kb on + strand, within Psyr_4989 at 5917.900 kb on + strand, within Psyr_4989 at 5917.906 kb on + strand, within Psyr_4989 at 5917.906 kb on + strand, within Psyr_4989 at 5917.985 kb on - strand, within Psyr_4989 at 5918.024 kb on - strand, within Psyr_4989 at 5918.126 kb on - strand at 5918.287 kb on + strand at 5918.287 kb on + strand at 5918.288 kb on - strand at 5918.291 kb on + strand at 5918.359 kb on + strand at 5918.359 kb on + strand at 5918.361 kb on + strand at 5918.362 kb on - strand at 5918.375 kb on + strand at 5918.411 kb on + strand at 5918.412 kb on - strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.559 kb on + strand at 5918.676 kb on + strand, within Psyr_4990 at 5918.676 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.923 kb on + strand, within Psyr_4990 at 5918.923 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.268 kb on - strand, within Psyr_4990 at 5919.268 kb on - strand, within Psyr_4990 at 5919.274 kb on - strand, within Psyr_4990 at 5919.421 kb on - strand, within Psyr_4990 at 5919.427 kb on - strand, within Psyr_4990 at 5919.490 kb on - strand, within Psyr_4990 at 5919.490 kb on - strand, within Psyr_4990 at 5919.670 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.813 kb on + strand, within Psyr_4990 at 5919.813 kb on + strand, within Psyr_4990 at 5919.813 kb on + strand, within Psyr_4990 at 5919.814 kb on - strand, within Psyr_4990 at 5919.969 kb on + strand, within Psyr_4990 at 5919.969 kb on + strand, within Psyr_4990 at 5919.975 kb on + strand, within Psyr_4990 at 5919.975 kb on + strand, within Psyr_4990 at 5919.975 kb on + strand, within Psyr_4990 at 5920.019 kb on - strand, within Psyr_4990 at 5920.039 kb on - strand, within Psyr_4990 at 5920.039 kb on - strand, within Psyr_4990 at 5920.039 kb on - strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.107 kb on + strand, within Psyr_4990 at 5920.108 kb on - strand, within Psyr_4990 at 5920.108 kb on - strand, within Psyr_4990 at 5920.113 kb on + strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.243 kb on - strand, within Psyr_4990 at 5920.311 kb on + strand, within Psyr_4990 at 5920.312 kb on - strand, within Psyr_4990 at 5920.315 kb on - strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.462 kb on - strand, within Psyr_4990 at 5920.489 kb on - strand, within Psyr_4990 at 5920.489 kb on - strand, within Psyr_4990 at 5920.494 kb on - strand, within Psyr_4990 at 5920.507 kb on - strand, within Psyr_4990 at 5920.507 kb on - strand, within Psyr_4990 at 5920.532 kb on + strand, within Psyr_4990 at 5920.579 kb on - strand, within Psyr_4990 at 5920.587 kb on - strand, within Psyr_4990 at 5920.628 kb on - strand, within Psyr_4990 at 5920.656 kb on - strand, within Psyr_4990 at 5920.747 kb on + strand at 5920.752 kb on - strand at 5920.754 kb on + strand at 5920.802 kb on - strand at 5920.802 kb on - strand at 5920.804 kb on + strand at 5920.805 kb on - strand at 5920.805 kb on - strand at 5920.805 kb on - strand at 5920.844 kb on + strand at 5920.845 kb on - strand at 5920.874 kb on + strand at 5920.875 kb on - strand at 5920.875 kb on - strand at 5920.895 kb on + strand at 5920.896 kb on - strand at 5920.922 kb on + strand at 5920.922 kb on + strand at 5920.923 kb on - strand at 5920.923 kb on - strand at 5920.940 kb on - strand at 5921.048 kb on + strand, within Psyr_4991 at 5921.127 kb on + strand, within Psyr_4991 at 5921.159 kb on - strand, within Psyr_4991 at 5921.212 kb on - strand, within Psyr_4991 at 5921.226 kb on - strand, within Psyr_4991 at 5921.377 kb on + strand at 5921.391 kb on + strand at 5921.464 kb on - strand at 5921.472 kb on + strand at 5921.472 kb on + strand at 5921.473 kb on - strand at 5921.478 kb on + strand at 5921.479 kb on - strand at 5921.479 kb on - strand at 5921.504 kb on + strand at 5921.504 kb on + strand at 5921.505 kb on - strand at 5921.578 kb on + strand at 5921.578 kb on + strand at 5921.667 kb on + strand at 5921.667 kb on + strand at 5921.668 kb on - strand at 5921.668 kb on - strand at 5921.668 kb on - strand at 5921.743 kb on + strand at 5921.743 kb on + strand at 5921.744 kb on - strand at 5921.744 kb on - strand at 5921.744 kb on - strand at 5921.799 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml remove 5,917,423 + Psyr_4988 0.81 -0.7 5,917,424 - Psyr_4988 0.81 -2.6 5,917,424 - Psyr_4988 0.81 +0.4 5,917,488 - Psyr_4988 0.86 -1.1 5,917,516 - Psyr_4988 0.88 -1.1 5,917,542 + Psyr_4988 0.89 -1.9 5,917,548 + Psyr_4988 0.90 +0.3 5,917,548 + Psyr_4988 0.90 +1.0 5,917,549 - Psyr_4988 0.90 -1.0 5,917,550 + Psyr_4988 0.90 -0.2 5,917,550 + Psyr_4988 0.90 -0.0 5,917,550 + Psyr_4988 0.90 -0.7 5,917,550 + Psyr_4988 0.90 -0.3 5,917,550 + Psyr_4988 0.90 -0.5 5,917,551 - -1.8 5,917,551 - -0.6 5,917,551 - -0.3 5,917,577 + +1.0 5,917,577 + -2.6 5,917,577 + -0.3 5,917,577 + +0.3 5,917,578 - -0.4 5,917,578 - -0.3 5,917,578 - +1.5 5,917,650 + -0.3 5,917,651 - -1.2 5,917,651 - -0.8 5,917,659 - +0.3 5,917,659 - -0.3 5,917,659 - -2.5 5,917,662 + -0.4 5,917,663 - -0.3 5,917,737 + Psyr_4989 0.11 -0.5 5,917,738 - Psyr_4989 0.12 -1.7 5,917,738 - Psyr_4989 0.12 -1.7 5,917,766 + Psyr_4989 0.18 +0.3 5,917,766 + Psyr_4989 0.18 +1.6 5,917,824 - Psyr_4989 0.30 -1.1 5,917,855 + Psyr_4989 0.37 -0.7 5,917,900 + Psyr_4989 0.46 -1.5 5,917,906 + Psyr_4989 0.47 -1.2 5,917,906 + Psyr_4989 0.47 +0.2 5,917,985 - Psyr_4989 0.64 -2.4 5,918,024 - Psyr_4989 0.72 -0.9 5,918,126 - +0.1 5,918,287 + +0.5 5,918,287 + +0.3 5,918,288 - -2.6 5,918,291 + +0.1 5,918,359 + -1.3 5,918,359 + +0.2 5,918,361 + -0.9 5,918,362 - +1.2 5,918,375 + -0.9 5,918,411 + -0.8 5,918,412 - +0.5 5,918,487 + -1.0 5,918,487 + -1.3 5,918,487 + -0.8 5,918,487 + -0.6 5,918,487 + -1.3 5,918,488 - +0.7 5,918,488 - -0.0 5,918,488 - -0.1 5,918,559 + +0.1 5,918,676 + Psyr_4990 0.11 -0.4 5,918,676 + Psyr_4990 0.11 +0.3 5,918,739 + Psyr_4990 0.13 -0.9 5,918,739 + Psyr_4990 0.13 +0.7 5,918,739 + Psyr_4990 0.13 +1.3 5,918,739 + Psyr_4990 0.13 +0.7 5,918,739 + Psyr_4990 0.13 -0.7 5,918,739 + Psyr_4990 0.13 -0.9 5,918,739 + Psyr_4990 0.13 +0.1 5,918,739 + Psyr_4990 0.13 +0.7 5,918,739 + Psyr_4990 0.13 -0.0 5,918,740 - Psyr_4990 0.13 +0.6 5,918,740 - Psyr_4990 0.13 -0.1 5,918,740 - Psyr_4990 0.13 -0.9 5,918,740 - Psyr_4990 0.13 -1.4 5,918,740 - Psyr_4990 0.13 -0.3 5,918,874 + Psyr_4990 0.18 -0.2 5,918,874 + Psyr_4990 0.18 -0.0 5,918,874 + Psyr_4990 0.18 +0.0 5,918,874 + Psyr_4990 0.18 -0.2 5,918,874 + Psyr_4990 0.18 +0.7 5,918,874 + Psyr_4990 0.18 -0.7 5,918,874 + Psyr_4990 0.18 -0.8 5,918,874 + Psyr_4990 0.18 -2.7 5,918,874 + Psyr_4990 0.18 +0.5 5,918,875 - Psyr_4990 0.18 +0.2 5,918,875 - Psyr_4990 0.18 +2.5 5,918,875 - Psyr_4990 0.18 +1.0 5,918,875 - Psyr_4990 0.18 -0.3 5,918,875 - Psyr_4990 0.18 -0.1 5,918,875 - Psyr_4990 0.18 -0.3 5,918,875 - Psyr_4990 0.18 -0.1 5,918,875 - Psyr_4990 0.18 +0.1 5,918,923 + Psyr_4990 0.20 -0.0 5,918,923 + Psyr_4990 0.20 +1.3 5,919,051 + Psyr_4990 0.25 +0.0 5,919,051 + Psyr_4990 0.25 +0.5 5,919,051 + Psyr_4990 0.25 -1.1 5,919,051 + Psyr_4990 0.25 -0.9 5,919,051 + Psyr_4990 0.25 -0.2 5,919,051 + Psyr_4990 0.25 -0.1 5,919,052 - Psyr_4990 0.25 -0.4 5,919,052 - Psyr_4990 0.25 +1.3 5,919,052 - Psyr_4990 0.25 +0.1 5,919,052 - Psyr_4990 0.25 -0.4 5,919,052 - Psyr_4990 0.25 +0.3 5,919,052 - Psyr_4990 0.25 +0.3 5,919,052 - Psyr_4990 0.25 -0.1 5,919,052 - Psyr_4990 0.25 +0.0 5,919,052 - Psyr_4990 0.25 +0.1 5,919,052 - Psyr_4990 0.25 +2.5 5,919,268 - Psyr_4990 0.33 +1.1 5,919,268 - Psyr_4990 0.33 +0.8 5,919,274 - Psyr_4990 0.34 -0.8 5,919,421 - Psyr_4990 0.39 +1.2 5,919,427 - Psyr_4990 0.39 -0.0 5,919,490 - Psyr_4990 0.42 +0.7 5,919,490 - Psyr_4990 0.42 +1.4 5,919,670 + Psyr_4990 0.49 +0.2 5,919,723 + Psyr_4990 0.51 -1.3 5,919,723 + Psyr_4990 0.51 -0.1 5,919,723 + Psyr_4990 0.51 +0.3 5,919,723 + Psyr_4990 0.51 +1.3 5,919,723 + Psyr_4990 0.51 +0.1 5,919,723 + Psyr_4990 0.51 +0.3 5,919,723 + Psyr_4990 0.51 -0.3 5,919,813 + Psyr_4990 0.54 +0.7 5,919,813 + Psyr_4990 0.54 -1.1 5,919,813 + Psyr_4990 0.54 +0.6 5,919,814 - Psyr_4990 0.54 +1.2 5,919,969 + Psyr_4990 0.60 -1.0 5,919,969 + Psyr_4990 0.60 -1.1 5,919,975 + Psyr_4990 0.60 +0.3 5,919,975 + Psyr_4990 0.60 +0.3 5,919,975 + Psyr_4990 0.60 +0.1 5,920,019 - Psyr_4990 0.62 +0.2 5,920,039 - Psyr_4990 0.63 +0.3 5,920,039 - Psyr_4990 0.63 -0.1 5,920,039 - Psyr_4990 0.63 +0.9 5,920,097 + Psyr_4990 0.65 +0.1 5,920,097 + Psyr_4990 0.65 -0.2 5,920,097 + Psyr_4990 0.65 +0.1 5,920,097 + Psyr_4990 0.65 -0.3 5,920,107 + Psyr_4990 0.66 -0.5 5,920,108 - Psyr_4990 0.66 -1.6 5,920,108 - Psyr_4990 0.66 -0.8 5,920,113 + Psyr_4990 0.66 +0.5 5,920,237 - Psyr_4990 0.71 +0.6 5,920,237 - Psyr_4990 0.71 +3.4 5,920,237 - Psyr_4990 0.71 -1.0 5,920,237 - Psyr_4990 0.71 -1.7 5,920,239 - Psyr_4990 0.71 -0.8 5,920,239 - Psyr_4990 0.71 +0.9 5,920,239 - Psyr_4990 0.71 +2.0 5,920,239 - Psyr_4990 0.71 -0.4 5,920,243 - Psyr_4990 0.71 -0.7 5,920,311 + Psyr_4990 0.73 -1.5 5,920,312 - Psyr_4990 0.73 -0.3 5,920,315 - Psyr_4990 0.74 +0.2 5,920,444 + Psyr_4990 0.78 +0.5 5,920,444 + Psyr_4990 0.78 -2.2 5,920,444 + Psyr_4990 0.78 -0.7 5,920,444 + Psyr_4990 0.78 -0.4 5,920,445 - Psyr_4990 0.79 -1.4 5,920,445 - Psyr_4990 0.79 -1.4 5,920,445 - Psyr_4990 0.79 -0.2 5,920,445 - Psyr_4990 0.79 +0.2 5,920,445 - Psyr_4990 0.79 +0.0 5,920,462 - Psyr_4990 0.79 +0.7 5,920,489 - Psyr_4990 0.80 -1.0 5,920,489 - Psyr_4990 0.80 -1.4 5,920,494 - Psyr_4990 0.80 -0.5 5,920,507 - Psyr_4990 0.81 -0.1 5,920,507 - Psyr_4990 0.81 -0.2 5,920,532 + Psyr_4990 0.82 +0.1 5,920,579 - Psyr_4990 0.84 -0.7 5,920,587 - Psyr_4990 0.84 +0.9 5,920,628 - Psyr_4990 0.86 -0.4 5,920,656 - Psyr_4990 0.87 +0.6 5,920,747 + +0.2 5,920,752 - -0.1 5,920,754 + -1.1 5,920,802 - -1.3 5,920,802 - -0.9 5,920,804 + +1.3 5,920,805 - +2.1 5,920,805 - -0.6 5,920,805 - -0.6 5,920,844 + +0.3 5,920,845 - -0.0 5,920,874 + +0.5 5,920,875 - -1.4 5,920,875 - -0.4 5,920,895 + +0.1 5,920,896 - -0.2 5,920,922 + +0.4 5,920,922 + +1.2 5,920,923 - +0.7 5,920,923 - -0.5 5,920,940 - -1.7 5,921,048 + Psyr_4991 0.12 -2.8 5,921,127 + Psyr_4991 0.36 -2.6 5,921,159 - Psyr_4991 0.46 -3.0 5,921,212 - Psyr_4991 0.63 +0.1 5,921,226 - Psyr_4991 0.67 -0.1 5,921,377 + -1.0 5,921,391 + -0.5 5,921,464 - -0.7 5,921,472 + +0.2 5,921,472 + +0.8 5,921,473 - -0.8 5,921,478 + -0.2 5,921,479 - +0.2 5,921,479 - +0.5 5,921,504 + +0.7 5,921,504 + -1.2 5,921,505 - -0.6 5,921,578 + -1.3 5,921,578 + -0.0 5,921,667 + +0.8 5,921,667 + -1.2 5,921,668 - +0.7 5,921,668 - +0.8 5,921,668 - +0.5 5,921,743 + -0.9 5,921,743 + -0.5 5,921,744 - +0.7 5,921,744 - -2.1 5,921,744 - +0.6 5,921,799 - -2.1 5,921,814 - +0.6 5,921,814 - +0.6 5,921,814 - -1.6 5,921,814 - +0.1
Or see this region's nucleotide sequence