Experiment: KB with Novobiocin 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4830 and Psyr_4831 overlap by 4 nucleotides Psyr_4831 and Psyr_4832 are separated by 12 nucleotides Psyr_4832 and Psyr_4833 are separated by 54 nucleotides
Psyr_4830: Psyr_4830 - Binding-protein-dependent transport systems inner membrane component, at 5,732,872 to 5,733,723
_4830
Psyr_4831: Psyr_4831 - ABC transporter, at 5,733,720 to 5,734,550
_4831
Psyr_4832: Psyr_4832 - histidine ammonia-lyase, at 5,734,563 to 5,736,104
_4832
Psyr_4833: Psyr_4833 - histidine ammonia-lyase, at 5,736,159 to 5,737,706
_4833
Position (kb) 5734
5735
5736
5737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5733.678 kb on + strand at 5733.853 kb on + strand, within Psyr_4831 at 5733.854 kb on - strand, within Psyr_4831 at 5733.971 kb on + strand, within Psyr_4831 at 5734.187 kb on - strand, within Psyr_4831 at 5734.249 kb on + strand, within Psyr_4831 at 5734.249 kb on + strand, within Psyr_4831 at 5734.249 kb on + strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.509 kb on + strand at 5734.509 kb on + strand at 5734.839 kb on - strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.894 kb on - strand, within Psyr_4832 at 5734.894 kb on - strand, within Psyr_4832 at 5734.894 kb on - strand, within Psyr_4832 at 5734.975 kb on + strand, within Psyr_4832 at 5734.998 kb on + strand, within Psyr_4832 at 5735.402 kb on + strand, within Psyr_4832 at 5735.721 kb on + strand, within Psyr_4832 at 5735.722 kb on - strand, within Psyr_4832 at 5735.722 kb on - strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.865 kb on - strand, within Psyr_4832 at 5736.100 kb on + strand at 5736.101 kb on - strand at 5736.101 kb on - strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.149 kb on + strand at 5736.150 kb on - strand at 5736.150 kb on - strand at 5736.169 kb on + strand at 5736.170 kb on - strand at 5736.170 kb on - strand at 5736.170 kb on - strand at 5736.170 kb on - strand at 5736.231 kb on + strand at 5736.231 kb on + strand at 5736.231 kb on + strand at 5736.232 kb on - strand at 5736.232 kb on - strand at 5736.575 kb on + strand, within Psyr_4833 at 5736.667 kb on - strand, within Psyr_4833 at 5736.784 kb on - strand, within Psyr_4833
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml remove 5,733,678 + +0.0 5,733,853 + Psyr_4831 0.16 -0.5 5,733,854 - Psyr_4831 0.16 -2.9 5,733,971 + Psyr_4831 0.30 -0.2 5,734,187 - Psyr_4831 0.56 -0.1 5,734,249 + Psyr_4831 0.64 +0.1 5,734,249 + Psyr_4831 0.64 -1.7 5,734,249 + Psyr_4831 0.64 -0.6 5,734,250 - Psyr_4831 0.64 -0.1 5,734,250 - Psyr_4831 0.64 +0.0 5,734,509 + +1.0 5,734,509 + -0.3 5,734,839 - Psyr_4832 0.18 -0.2 5,734,893 + Psyr_4832 0.21 -0.5 5,734,893 + Psyr_4832 0.21 +2.6 5,734,893 + Psyr_4832 0.21 +0.2 5,734,894 - Psyr_4832 0.21 -0.8 5,734,894 - Psyr_4832 0.21 -1.0 5,734,894 - Psyr_4832 0.21 +1.8 5,734,975 + Psyr_4832 0.27 -0.1 5,734,998 + Psyr_4832 0.28 +0.1 5,735,402 + Psyr_4832 0.54 -0.6 5,735,721 + Psyr_4832 0.75 -1.3 5,735,722 - Psyr_4832 0.75 +0.4 5,735,722 - Psyr_4832 0.75 +1.0 5,735,784 + Psyr_4832 0.79 -0.4 5,735,784 + Psyr_4832 0.79 +1.0 5,735,784 + Psyr_4832 0.79 -0.5 5,735,784 + Psyr_4832 0.79 +1.6 5,735,784 + Psyr_4832 0.79 +0.6 5,735,784 + Psyr_4832 0.79 +0.8 5,735,784 + Psyr_4832 0.79 -1.5 5,735,784 + Psyr_4832 0.79 -0.1 5,735,785 - Psyr_4832 0.79 -0.5 5,735,785 - Psyr_4832 0.79 +0.1 5,735,785 - Psyr_4832 0.79 +2.3 5,735,785 - Psyr_4832 0.79 -0.4 5,735,785 - Psyr_4832 0.79 -0.2 5,735,785 - Psyr_4832 0.79 +0.2 5,735,785 - Psyr_4832 0.79 +1.8 5,735,785 - Psyr_4832 0.79 -0.8 5,735,785 - Psyr_4832 0.79 -0.0 5,735,785 - Psyr_4832 0.79 -0.3 5,735,785 - Psyr_4832 0.79 -0.8 5,735,785 - Psyr_4832 0.79 +0.2 5,735,785 - Psyr_4832 0.79 -1.4 5,735,865 - Psyr_4832 0.84 +0.3 5,736,100 + -0.6 5,736,101 - -0.2 5,736,101 - +0.0 5,736,102 + +0.3 5,736,102 + -0.2 5,736,102 + -0.1 5,736,102 + +0.8 5,736,102 + -0.6 5,736,102 + +0.5 5,736,103 - +1.7 5,736,103 - +0.4 5,736,139 + +0.5 5,736,139 + +0.8 5,736,140 - +0.0 5,736,140 - -0.2 5,736,149 + +0.2 5,736,150 - +0.8 5,736,150 - +0.0 5,736,169 + +1.5 5,736,170 - -0.1 5,736,170 - +1.6 5,736,170 - -0.9 5,736,170 - -1.0 5,736,231 + -2.4 5,736,231 + +1.5 5,736,231 + -1.5 5,736,232 - -1.5 5,736,232 - -0.5 5,736,575 + Psyr_4833 0.27 +1.2 5,736,667 - Psyr_4833 0.33 +0.1 5,736,784 - Psyr_4833 0.40 +0.3
Or see this region's nucleotide sequence