Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4193

Experiment: KB with Novobiocin 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4192 and Psyr_4193 are separated by 216 nucleotidesPsyr_4193 and Psyr_4194 are separated by 21 nucleotides Psyr_4192: Psyr_4192 - carbamoyl-phosphate synthase small subunit, at 4,987,054 to 4,988,190 _4192 Psyr_4193: Psyr_4193 - dihydrodipicolinate reductase, at 4,988,407 to 4,989,210 _4193 Psyr_4194: Psyr_4194 - DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal, at 4,989,232 to 4,990,374 _4194 Position (kb) 4988 4989 4990Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4988.204 kb on - strandat 4988.208 kb on - strandat 4988.208 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.254 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.258 kb on - strandat 4988.318 kb on - strandat 4988.318 kb on - strandat 4988.323 kb on - strandat 4988.400 kb on + strandat 4988.400 kb on + strandat 4988.400 kb on + strandat 4988.401 kb on - strandat 4989.547 kb on - strand, within Psyr_4194

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml
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4,988,204 - +0.2
4,988,208 - -1.0
4,988,208 - -2.8
4,988,254 - +0.5
4,988,254 - -0.3
4,988,254 - +0.3
4,988,254 - -1.4
4,988,254 - +1.0
4,988,254 - -0.3
4,988,254 - -1.1
4,988,254 - +0.5
4,988,258 - -0.8
4,988,258 - -3.0
4,988,258 - -0.3
4,988,258 - -0.5
4,988,258 - -0.5
4,988,258 - -0.3
4,988,258 - +0.4
4,988,258 - +0.5
4,988,258 - -1.0
4,988,318 - +0.8
4,988,318 - +0.1
4,988,323 - -1.1
4,988,400 + -3.9
4,988,400 + -0.2
4,988,400 + -0.1
4,988,401 - -0.3
4,989,547 - Psyr_4194 0.28 -1.4

Or see this region's nucleotide sequence