Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3989

Experiment: KB with Novobiocin 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3988 and Psyr_3989 are separated by 296 nucleotidesPsyr_3989 and Psyr_3990 are separated by 2 nucleotides Psyr_3988: Psyr_3988 - conserved hypothetical protein, at 4,746,168 to 4,747,388 _3988 Psyr_3989: Psyr_3989 - hypothetical protein, at 4,747,685 to 4,748,905 _3989 Psyr_3990: Psyr_3990 - conserved hypothetical protein, at 4,748,908 to 4,749,918 _3990 Position (kb) 4747 4748 4749Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4746.748 kb on + strand, within Psyr_3988at 4746.748 kb on + strand, within Psyr_3988at 4746.748 kb on + strand, within Psyr_3988at 4746.749 kb on - strand, within Psyr_3988at 4746.772 kb on + strand, within Psyr_3988at 4746.772 kb on + strand, within Psyr_3988at 4746.870 kb on - strand, within Psyr_3988at 4747.184 kb on - strand, within Psyr_3988at 4747.270 kb on + strandat 4747.270 kb on + strandat 4747.270 kb on + strandat 4747.270 kb on + strandat 4747.271 kb on - strandat 4747.271 kb on - strandat 4747.271 kb on - strandat 4747.377 kb on - strandat 4747.444 kb on - strandat 4747.486 kb on + strandat 4747.509 kb on + strandat 4747.598 kb on + strandat 4747.617 kb on + strandat 4747.617 kb on + strandat 4747.618 kb on - strandat 4747.618 kb on - strandat 4747.621 kb on + strandat 4747.621 kb on + strandat 4747.622 kb on - strandat 4747.629 kb on + strandat 4747.685 kb on - strandat 4747.685 kb on - strandat 4747.751 kb on + strandat 4747.752 kb on - strandat 4747.752 kb on - strandat 4747.752 kb on - strandat 4747.752 kb on - strandat 4747.762 kb on + strandat 4747.763 kb on - strandat 4747.764 kb on + strandat 4747.764 kb on + strandat 4747.764 kb on + strandat 4747.765 kb on - strandat 4747.765 kb on - strandat 4747.804 kb on + strandat 4747.903 kb on + strand, within Psyr_3989at 4747.952 kb on + strand, within Psyr_3989at 4747.952 kb on + strand, within Psyr_3989at 4747.952 kb on + strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.150 kb on - strand, within Psyr_3989at 4748.232 kb on + strand, within Psyr_3989at 4748.232 kb on + strand, within Psyr_3989at 4748.233 kb on - strand, within Psyr_3989at 4748.331 kb on + strand, within Psyr_3989at 4748.331 kb on + strand, within Psyr_3989at 4748.332 kb on - strand, within Psyr_3989at 4748.332 kb on - strand, within Psyr_3989at 4748.332 kb on - strand, within Psyr_3989at 4748.409 kb on + strand, within Psyr_3989at 4748.409 kb on + strand, within Psyr_3989at 4748.409 kb on + strand, within Psyr_3989at 4748.409 kb on + strand, within Psyr_3989at 4748.409 kb on + strand, within Psyr_3989at 4748.410 kb on - strand, within Psyr_3989at 4748.410 kb on - strand, within Psyr_3989at 4748.410 kb on - strand, within Psyr_3989at 4748.410 kb on - strand, within Psyr_3989at 4748.429 kb on + strand, within Psyr_3989at 4748.429 kb on + strand, within Psyr_3989at 4748.430 kb on - strand, within Psyr_3989at 4748.431 kb on + strand, within Psyr_3989at 4748.431 kb on + strand, within Psyr_3989at 4748.431 kb on + strand, within Psyr_3989at 4748.431 kb on + strand, within Psyr_3989at 4748.432 kb on - strand, within Psyr_3989at 4748.432 kb on - strand, within Psyr_3989at 4748.432 kb on - strand, within Psyr_3989at 4748.432 kb on - strand, within Psyr_3989at 4748.432 kb on - strand, within Psyr_3989at 4748.626 kb on - strand, within Psyr_3989at 4748.644 kb on + strand, within Psyr_3989at 4748.691 kb on + strand, within Psyr_3989at 4748.691 kb on + strand, within Psyr_3989at 4748.691 kb on + strand, within Psyr_3989at 4748.691 kb on + strand, within Psyr_3989at 4748.691 kb on + strand, within Psyr_3989at 4748.691 kb on + strand, within Psyr_3989at 4748.691 kb on + strand, within Psyr_3989at 4748.692 kb on - strand, within Psyr_3989at 4748.692 kb on - strand, within Psyr_3989at 4748.692 kb on - strand, within Psyr_3989at 4748.711 kb on + strand, within Psyr_3989at 4748.711 kb on + strand, within Psyr_3989at 4748.711 kb on + strand, within Psyr_3989at 4748.711 kb on + strand, within Psyr_3989at 4748.711 kb on + strand, within Psyr_3989at 4748.711 kb on + strand, within Psyr_3989at 4748.712 kb on - strand, within Psyr_3989at 4748.712 kb on - strand, within Psyr_3989at 4748.712 kb on - strand, within Psyr_3989at 4748.778 kb on + strand, within Psyr_3989at 4748.779 kb on - strand, within Psyr_3989at 4748.814 kb on + strandat 4748.836 kb on - strandat 4749.003 kb on + strandat 4749.003 kb on + strandat 4749.003 kb on + strandat 4749.003 kb on + strandat 4749.004 kb on - strandat 4749.004 kb on - strandat 4749.004 kb on - strandat 4749.113 kb on + strand, within Psyr_3990at 4749.113 kb on + strand, within Psyr_3990at 4749.113 kb on + strand, within Psyr_3990at 4749.113 kb on + strand, within Psyr_3990at 4749.113 kb on + strand, within Psyr_3990at 4749.114 kb on - strand, within Psyr_3990at 4749.303 kb on + strand, within Psyr_3990at 4749.314 kb on + strand, within Psyr_3990at 4749.314 kb on + strand, within Psyr_3990at 4749.315 kb on - strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.447 kb on + strand, within Psyr_3990at 4749.447 kb on + strand, within Psyr_3990at 4749.457 kb on + strand, within Psyr_3990at 4749.457 kb on + strand, within Psyr_3990at 4749.457 kb on + strand, within Psyr_3990at 4749.458 kb on - strand, within Psyr_3990at 4749.466 kb on + strand, within Psyr_3990at 4749.613 kb on + strand, within Psyr_3990at 4749.613 kb on + strand, within Psyr_3990at 4749.614 kb on - strand, within Psyr_3990at 4749.614 kb on - strand, within Psyr_3990at 4749.614 kb on - strand, within Psyr_3990at 4749.655 kb on + strand, within Psyr_3990at 4749.656 kb on - strand, within Psyr_3990at 4749.656 kb on - strand, within Psyr_3990at 4749.790 kb on + strand, within Psyr_3990at 4749.791 kb on - strand, within Psyr_3990at 4749.791 kb on - strand, within Psyr_3990at 4749.802 kb on + strand, within Psyr_3990at 4749.880 kb on + strandat 4749.880 kb on + strandat 4749.880 kb on + strandat 4749.880 kb on + strandat 4749.881 kb on - strandat 4749.884 kb on + strandat 4749.884 kb on + strandat 4749.885 kb on - strandat 4749.885 kb on - strandat 4749.885 kb on - strandat 4749.885 kb on - strandat 4749.896 kb on - strandat 4749.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml
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4,746,748 + Psyr_3988 0.48 -0.9
4,746,748 + Psyr_3988 0.48 +2.1
4,746,748 + Psyr_3988 0.48 -1.5
4,746,749 - Psyr_3988 0.48 +0.6
4,746,772 + Psyr_3988 0.49 -1.1
4,746,772 + Psyr_3988 0.49 +0.5
4,746,870 - Psyr_3988 0.57 -0.1
4,747,184 - Psyr_3988 0.83 +0.3
4,747,270 + +0.9
4,747,270 + -0.1
4,747,270 + -0.6
4,747,270 + -0.5
4,747,271 - +1.1
4,747,271 - +0.1
4,747,271 - +0.7
4,747,377 - -0.1
4,747,444 - +0.3
4,747,486 + +0.6
4,747,509 + -0.8
4,747,598 + -0.7
4,747,617 + -0.6
4,747,617 + -1.8
4,747,618 - -0.9
4,747,618 - -1.1
4,747,621 + -1.6
4,747,621 + -0.8
4,747,622 - -0.0
4,747,629 + +0.9
4,747,685 - +1.7
4,747,685 - +1.0
4,747,751 + +0.7
4,747,752 - +0.3
4,747,752 - -0.7
4,747,752 - +0.3
4,747,752 - +1.9
4,747,762 + -0.8
4,747,763 - -0.9
4,747,764 + -0.6
4,747,764 + +1.7
4,747,764 + -1.1
4,747,765 - -0.7
4,747,765 - +0.9
4,747,804 + -0.3
4,747,903 + Psyr_3989 0.18 -0.6
4,747,952 + Psyr_3989 0.22 +0.0
4,747,952 + Psyr_3989 0.22 -2.0
4,747,952 + Psyr_3989 0.22 -2.3
4,747,953 - Psyr_3989 0.22 -0.4
4,747,953 - Psyr_3989 0.22 +0.6
4,747,953 - Psyr_3989 0.22 +0.6
4,747,953 - Psyr_3989 0.22 -0.2
4,747,953 - Psyr_3989 0.22 +0.5
4,748,075 + Psyr_3989 0.32 +0.1
4,748,075 + Psyr_3989 0.32 +1.1
4,748,075 + Psyr_3989 0.32 -2.2
4,748,075 + Psyr_3989 0.32 -0.3
4,748,075 + Psyr_3989 0.32 +0.3
4,748,076 - Psyr_3989 0.32 +0.0
4,748,076 - Psyr_3989 0.32 +2.0
4,748,076 - Psyr_3989 0.32 -0.2
4,748,076 - Psyr_3989 0.32 +0.9
4,748,150 - Psyr_3989 0.38 -1.3
4,748,232 + Psyr_3989 0.45 +1.2
4,748,232 + Psyr_3989 0.45 -1.0
4,748,233 - Psyr_3989 0.45 +0.7
4,748,331 + Psyr_3989 0.53 +0.1
4,748,331 + Psyr_3989 0.53 -2.1
4,748,332 - Psyr_3989 0.53 -2.1
4,748,332 - Psyr_3989 0.53 -1.1
4,748,332 - Psyr_3989 0.53 -0.2
4,748,409 + Psyr_3989 0.59 +0.2
4,748,409 + Psyr_3989 0.59 -0.1
4,748,409 + Psyr_3989 0.59 +0.6
4,748,409 + Psyr_3989 0.59 +0.2
4,748,409 + Psyr_3989 0.59 -0.6
4,748,410 - Psyr_3989 0.59 +0.4
4,748,410 - Psyr_3989 0.59 +0.7
4,748,410 - Psyr_3989 0.59 +0.5
4,748,410 - Psyr_3989 0.59 -0.6
4,748,429 + Psyr_3989 0.61 +0.0
4,748,429 + Psyr_3989 0.61 -0.6
4,748,430 - Psyr_3989 0.61 +0.2
4,748,431 + Psyr_3989 0.61 -0.7
4,748,431 + Psyr_3989 0.61 -1.0
4,748,431 + Psyr_3989 0.61 -0.3
4,748,431 + Psyr_3989 0.61 +1.1
4,748,432 - Psyr_3989 0.61 -1.6
4,748,432 - Psyr_3989 0.61 -0.8
4,748,432 - Psyr_3989 0.61 -2.1
4,748,432 - Psyr_3989 0.61 -0.5
4,748,432 - Psyr_3989 0.61 +0.6
4,748,626 - Psyr_3989 0.77 -0.3
4,748,644 + Psyr_3989 0.79 +3.7
4,748,691 + Psyr_3989 0.82 -0.2
4,748,691 + Psyr_3989 0.82 -0.7
4,748,691 + Psyr_3989 0.82 +0.5
4,748,691 + Psyr_3989 0.82 -0.3
4,748,691 + Psyr_3989 0.82 -1.6
4,748,691 + Psyr_3989 0.82 +0.2
4,748,691 + Psyr_3989 0.82 -0.4
4,748,692 - Psyr_3989 0.82 -0.6
4,748,692 - Psyr_3989 0.82 +0.3
4,748,692 - Psyr_3989 0.82 +0.1
4,748,711 + Psyr_3989 0.84 +0.8
4,748,711 + Psyr_3989 0.84 -0.3
4,748,711 + Psyr_3989 0.84 +0.2
4,748,711 + Psyr_3989 0.84 -0.0
4,748,711 + Psyr_3989 0.84 -0.4
4,748,711 + Psyr_3989 0.84 -0.8
4,748,712 - Psyr_3989 0.84 +0.2
4,748,712 - Psyr_3989 0.84 -1.8
4,748,712 - Psyr_3989 0.84 -0.1
4,748,778 + Psyr_3989 0.90 -1.9
4,748,779 - Psyr_3989 0.90 -1.0
4,748,814 + -0.1
4,748,836 - -0.6
4,749,003 + -0.1
4,749,003 + +3.2
4,749,003 + -0.0
4,749,003 + -0.2
4,749,004 - -0.8
4,749,004 - +2.5
4,749,004 - +0.9
4,749,113 + Psyr_3990 0.20 -1.0
4,749,113 + Psyr_3990 0.20 -0.4
4,749,113 + Psyr_3990 0.20 -0.1
4,749,113 + Psyr_3990 0.20 +1.2
4,749,113 + Psyr_3990 0.20 -3.4
4,749,114 - Psyr_3990 0.20 +0.9
4,749,303 + Psyr_3990 0.39 -1.5
4,749,314 + Psyr_3990 0.40 +1.2
4,749,314 + Psyr_3990 0.40 +1.2
4,749,315 - Psyr_3990 0.40 -1.5
4,749,350 + Psyr_3990 0.44 +0.2
4,749,350 + Psyr_3990 0.44 +0.4
4,749,350 + Psyr_3990 0.44 -0.7
4,749,350 + Psyr_3990 0.44 -0.7
4,749,351 - Psyr_3990 0.44 +0.9
4,749,351 - Psyr_3990 0.44 +0.6
4,749,351 - Psyr_3990 0.44 -0.2
4,749,351 - Psyr_3990 0.44 +1.5
4,749,351 - Psyr_3990 0.44 -1.4
4,749,351 - Psyr_3990 0.44 +1.9
4,749,447 + Psyr_3990 0.53 +0.4
4,749,447 + Psyr_3990 0.53 -0.3
4,749,457 + Psyr_3990 0.54 +0.1
4,749,457 + Psyr_3990 0.54 -0.4
4,749,457 + Psyr_3990 0.54 +0.9
4,749,458 - Psyr_3990 0.54 +1.9
4,749,466 + Psyr_3990 0.55 -0.8
4,749,613 + Psyr_3990 0.70 -0.7
4,749,613 + Psyr_3990 0.70 -0.2
4,749,614 - Psyr_3990 0.70 -0.1
4,749,614 - Psyr_3990 0.70 -0.8
4,749,614 - Psyr_3990 0.70 +0.9
4,749,655 + Psyr_3990 0.74 -0.1
4,749,656 - Psyr_3990 0.74 +0.5
4,749,656 - Psyr_3990 0.74 +0.5
4,749,790 + Psyr_3990 0.87 +1.1
4,749,791 - Psyr_3990 0.87 +0.9
4,749,791 - Psyr_3990 0.87 -0.5
4,749,802 + Psyr_3990 0.88 +1.2
4,749,880 + +1.4
4,749,880 + -0.6
4,749,880 + +0.0
4,749,880 + -1.2
4,749,881 - -1.0
4,749,884 + -0.1
4,749,884 + -0.1
4,749,885 - -0.5
4,749,885 - -0.1
4,749,885 - -0.2
4,749,885 - +0.5
4,749,896 - -1.3
4,749,896 - +3.7

Or see this region's nucleotide sequence