Experiment: KB with Novobiocin 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3966 and Psyr_3967 are separated by 62 nucleotides Psyr_3967 and Psyr_3968 are separated by 1 nucleotides Psyr_3968 and Psyr_3969 overlap by 8 nucleotides
Psyr_3966: Psyr_3966 - Uncharacterized protein UPF0065, at 4,713,938 to 4,714,915
_3966
Psyr_3967: Psyr_3967 - membrane protein TctB, putative, at 4,714,978 to 4,715,436
_3967
Psyr_3968: Psyr_3968 - Protein of unknown function DUF112, at 4,715,438 to 4,716,952
_3968
Psyr_3969: Psyr_3969 - Putative ammonia monooxygenase, at 4,716,945 to 4,717,979
_3969
Position (kb) 4715
4716
4717 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4714.628 kb on - strand, within Psyr_3966 at 4714.695 kb on + strand, within Psyr_3966 at 4714.709 kb on + strand, within Psyr_3966 at 4714.709 kb on + strand, within Psyr_3966 at 4714.739 kb on + strand, within Psyr_3966 at 4714.739 kb on + strand, within Psyr_3966 at 4714.739 kb on + strand, within Psyr_3966 at 4714.739 kb on + strand, within Psyr_3966 at 4714.739 kb on + strand, within Psyr_3966 at 4714.739 kb on + strand, within Psyr_3966 at 4714.740 kb on - strand, within Psyr_3966 at 4714.853 kb on + strand at 4714.853 kb on + strand at 4714.853 kb on + strand at 4714.853 kb on + strand at 4714.853 kb on + strand at 4714.853 kb on + strand at 4714.853 kb on + strand at 4714.854 kb on - strand at 4714.854 kb on - strand at 4714.854 kb on - strand at 4714.985 kb on + strand at 4714.985 kb on + strand at 4714.985 kb on + strand at 4714.985 kb on + strand at 4714.985 kb on + strand at 4714.985 kb on + strand at 4714.985 kb on + strand at 4714.985 kb on + strand at 4714.985 kb on + strand at 4714.985 kb on + strand at 4714.986 kb on - strand at 4714.986 kb on - strand at 4715.024 kb on + strand, within Psyr_3967 at 4715.024 kb on + strand, within Psyr_3967 at 4715.025 kb on - strand, within Psyr_3967 at 4715.068 kb on + strand, within Psyr_3967 at 4715.135 kb on - strand, within Psyr_3967 at 4715.135 kb on - strand, within Psyr_3967 at 4715.135 kb on - strand, within Psyr_3967 at 4715.135 kb on - strand, within Psyr_3967 at 4715.312 kb on - strand, within Psyr_3967 at 4715.369 kb on - strand, within Psyr_3967 at 4715.434 kb on + strand at 4715.443 kb on + strand at 4715.444 kb on - strand at 4715.489 kb on + strand at 4715.528 kb on - strand at 4715.661 kb on - strand, within Psyr_3968 at 4715.882 kb on + strand, within Psyr_3968 at 4715.882 kb on + strand, within Psyr_3968 at 4715.882 kb on + strand, within Psyr_3968 at 4715.882 kb on + strand, within Psyr_3968 at 4715.883 kb on - strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.036 kb on + strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.037 kb on - strand, within Psyr_3968 at 4716.203 kb on - strand, within Psyr_3968 at 4716.203 kb on - strand, within Psyr_3968 at 4716.278 kb on + strand, within Psyr_3968 at 4716.278 kb on + strand, within Psyr_3968 at 4716.278 kb on + strand, within Psyr_3968 at 4716.278 kb on + strand, within Psyr_3968 at 4716.278 kb on + strand, within Psyr_3968 at 4716.278 kb on + strand, within Psyr_3968 at 4716.279 kb on - strand, within Psyr_3968 at 4716.279 kb on - strand, within Psyr_3968 at 4716.279 kb on - strand, within Psyr_3968 at 4716.279 kb on - strand, within Psyr_3968 at 4716.279 kb on - strand, within Psyr_3968 at 4716.279 kb on - strand, within Psyr_3968 at 4716.279 kb on - strand, within Psyr_3968 at 4716.459 kb on - strand, within Psyr_3968 at 4716.459 kb on - strand, within Psyr_3968 at 4716.653 kb on + strand, within Psyr_3968 at 4716.654 kb on - strand, within Psyr_3968 at 4716.654 kb on - strand, within Psyr_3968 at 4716.654 kb on - strand, within Psyr_3968 at 4716.654 kb on - strand, within Psyr_3968 at 4716.654 kb on - strand, within Psyr_3968 at 4716.704 kb on - strand, within Psyr_3968 at 4717.005 kb on + strand at 4717.186 kb on + strand, within Psyr_3969 at 4717.187 kb on - strand, within Psyr_3969 at 4717.187 kb on - strand, within Psyr_3969 at 4717.393 kb on + strand, within Psyr_3969 at 4717.431 kb on + strand, within Psyr_3969 at 4717.431 kb on + strand, within Psyr_3969 at 4717.432 kb on - strand, within Psyr_3969 at 4717.432 kb on - strand, within Psyr_3969 at 4717.432 kb on - strand, within Psyr_3969 at 4717.432 kb on - strand, within Psyr_3969 at 4717.432 kb on - strand, within Psyr_3969 at 4717.432 kb on - strand, within Psyr_3969 at 4717.435 kb on + strand, within Psyr_3969 at 4717.435 kb on + strand, within Psyr_3969 at 4717.436 kb on - strand, within Psyr_3969
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml remove 4,714,628 - Psyr_3966 0.71 -0.2 4,714,695 + Psyr_3966 0.77 -0.3 4,714,709 + Psyr_3966 0.79 +1.0 4,714,709 + Psyr_3966 0.79 -0.4 4,714,739 + Psyr_3966 0.82 +3.9 4,714,739 + Psyr_3966 0.82 -0.1 4,714,739 + Psyr_3966 0.82 -0.9 4,714,739 + Psyr_3966 0.82 +0.5 4,714,739 + Psyr_3966 0.82 -0.2 4,714,739 + Psyr_3966 0.82 -0.5 4,714,740 - Psyr_3966 0.82 +1.1 4,714,853 + +0.1 4,714,853 + +0.8 4,714,853 + -0.2 4,714,853 + -0.4 4,714,853 + +0.0 4,714,853 + +0.0 4,714,853 + -0.6 4,714,854 - -1.0 4,714,854 - -0.1 4,714,854 - -0.0 4,714,985 + -1.0 4,714,985 + +0.1 4,714,985 + -0.5 4,714,985 + -0.2 4,714,985 + -0.6 4,714,985 + -0.1 4,714,985 + -0.0 4,714,985 + +0.6 4,714,985 + +1.7 4,714,985 + +0.3 4,714,986 - -0.1 4,714,986 - +0.3 4,715,024 + Psyr_3967 0.10 -0.0 4,715,024 + Psyr_3967 0.10 +1.3 4,715,025 - Psyr_3967 0.10 -1.4 4,715,068 + Psyr_3967 0.20 -0.9 4,715,135 - Psyr_3967 0.34 +0.1 4,715,135 - Psyr_3967 0.34 +0.7 4,715,135 - Psyr_3967 0.34 -1.3 4,715,135 - Psyr_3967 0.34 -0.2 4,715,312 - Psyr_3967 0.73 -0.6 4,715,369 - Psyr_3967 0.85 -0.5 4,715,434 + +0.4 4,715,443 + +0.5 4,715,444 - -0.3 4,715,489 + +0.3 4,715,528 - +0.8 4,715,661 - Psyr_3968 0.15 -0.1 4,715,882 + Psyr_3968 0.29 +0.5 4,715,882 + Psyr_3968 0.29 -0.4 4,715,882 + Psyr_3968 0.29 -0.4 4,715,882 + Psyr_3968 0.29 -0.2 4,715,883 - Psyr_3968 0.29 -0.3 4,716,036 + Psyr_3968 0.39 +0.2 4,716,036 + Psyr_3968 0.39 +2.1 4,716,036 + Psyr_3968 0.39 -0.7 4,716,036 + Psyr_3968 0.39 -0.7 4,716,036 + Psyr_3968 0.39 +0.6 4,716,036 + Psyr_3968 0.39 +0.3 4,716,036 + Psyr_3968 0.39 -0.7 4,716,036 + Psyr_3968 0.39 +0.9 4,716,036 + Psyr_3968 0.39 -0.2 4,716,036 + Psyr_3968 0.39 -0.7 4,716,036 + Psyr_3968 0.39 +0.9 4,716,036 + Psyr_3968 0.39 -0.1 4,716,036 + Psyr_3968 0.39 -0.7 4,716,036 + Psyr_3968 0.39 +0.1 4,716,036 + Psyr_3968 0.39 +0.5 4,716,036 + Psyr_3968 0.39 +0.3 4,716,036 + Psyr_3968 0.39 -0.1 4,716,036 + Psyr_3968 0.39 -1.0 4,716,037 - Psyr_3968 0.40 -1.8 4,716,037 - Psyr_3968 0.40 +0.1 4,716,037 - Psyr_3968 0.40 -1.2 4,716,037 - Psyr_3968 0.40 -0.9 4,716,037 - Psyr_3968 0.40 +0.4 4,716,037 - Psyr_3968 0.40 +0.6 4,716,037 - Psyr_3968 0.40 -0.1 4,716,037 - Psyr_3968 0.40 -0.4 4,716,037 - Psyr_3968 0.40 -1.1 4,716,037 - Psyr_3968 0.40 -0.5 4,716,037 - Psyr_3968 0.40 +0.5 4,716,037 - Psyr_3968 0.40 +1.6 4,716,037 - Psyr_3968 0.40 +0.3 4,716,037 - Psyr_3968 0.40 -0.2 4,716,203 - Psyr_3968 0.50 -1.4 4,716,203 - Psyr_3968 0.50 -0.7 4,716,278 + Psyr_3968 0.55 +0.4 4,716,278 + Psyr_3968 0.55 +0.4 4,716,278 + Psyr_3968 0.55 +2.3 4,716,278 + Psyr_3968 0.55 +0.4 4,716,278 + Psyr_3968 0.55 +0.7 4,716,278 + Psyr_3968 0.55 -0.5 4,716,279 - Psyr_3968 0.56 -0.0 4,716,279 - Psyr_3968 0.56 -0.5 4,716,279 - Psyr_3968 0.56 -0.1 4,716,279 - Psyr_3968 0.56 +0.2 4,716,279 - Psyr_3968 0.56 +1.8 4,716,279 - Psyr_3968 0.56 -2.4 4,716,279 - Psyr_3968 0.56 -0.3 4,716,459 - Psyr_3968 0.67 +0.7 4,716,459 - Psyr_3968 0.67 -0.5 4,716,653 + Psyr_3968 0.80 -1.5 4,716,654 - Psyr_3968 0.80 -0.2 4,716,654 - Psyr_3968 0.80 +0.9 4,716,654 - Psyr_3968 0.80 -0.9 4,716,654 - Psyr_3968 0.80 +0.2 4,716,654 - Psyr_3968 0.80 -0.5 4,716,704 - Psyr_3968 0.84 -0.4 4,717,005 + +0.8 4,717,186 + Psyr_3969 0.23 +0.4 4,717,187 - Psyr_3969 0.23 +0.6 4,717,187 - Psyr_3969 0.23 -2.4 4,717,393 + Psyr_3969 0.43 -0.2 4,717,431 + Psyr_3969 0.47 +0.7 4,717,431 + Psyr_3969 0.47 +0.3 4,717,432 - Psyr_3969 0.47 -0.7 4,717,432 - Psyr_3969 0.47 -0.5 4,717,432 - Psyr_3969 0.47 +0.3 4,717,432 - Psyr_3969 0.47 -1.0 4,717,432 - Psyr_3969 0.47 -0.8 4,717,432 - Psyr_3969 0.47 -0.6 4,717,435 + Psyr_3969 0.47 +1.4 4,717,435 + Psyr_3969 0.47 +0.3 4,717,436 - Psyr_3969 0.47 +0.3
Or see this region's nucleotide sequence