Experiment: KB with Novobiocin 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3682 and Psyr_3683 are separated by 328 nucleotides Psyr_3683 and Psyr_3684 are separated by 89 nucleotides Psyr_3684 and Psyr_3685 are separated by 75 nucleotides
Psyr_3682: Psyr_3682 - L-sorbosone dehydrogenase, at 4,368,342 to 4,369,670
_3682
Psyr_3683: Psyr_3683 - NLP/P60, at 4,369,999 to 4,370,544
_3683
Psyr_3684: Psyr_3684 - NLP/P60, at 4,370,634 to 4,371,362
_3684
Psyr_3685: Psyr_3685 - Silent information regulator protein Sir2, at 4,371,438 to 4,372,181
_3685
Position (kb) 4369
4370
4371 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4368.999 kb on + strand, within Psyr_3682 at 4368.999 kb on + strand, within Psyr_3682 at 4368.999 kb on + strand, within Psyr_3682 at 4369.000 kb on - strand, within Psyr_3682 at 4369.000 kb on - strand, within Psyr_3682 at 4369.000 kb on - strand, within Psyr_3682 at 4369.218 kb on + strand, within Psyr_3682 at 4369.219 kb on - strand, within Psyr_3682 at 4369.219 kb on - strand, within Psyr_3682 at 4369.249 kb on - strand, within Psyr_3682 at 4369.266 kb on + strand, within Psyr_3682 at 4369.266 kb on + strand, within Psyr_3682 at 4369.266 kb on + strand, within Psyr_3682 at 4369.267 kb on - strand, within Psyr_3682 at 4369.267 kb on - strand, within Psyr_3682 at 4369.267 kb on - strand, within Psyr_3682 at 4369.267 kb on - strand, within Psyr_3682 at 4369.681 kb on - strand at 4369.776 kb on - strand at 4369.863 kb on + strand at 4369.863 kb on + strand at 4369.864 kb on - strand at 4369.918 kb on + strand at 4369.919 kb on - strand at 4370.000 kb on + strand at 4370.054 kb on + strand, within Psyr_3683 at 4370.054 kb on + strand, within Psyr_3683 at 4370.054 kb on + strand, within Psyr_3683 at 4370.055 kb on - strand, within Psyr_3683 at 4370.055 kb on - strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.144 kb on + strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.145 kb on - strand, within Psyr_3683 at 4370.300 kb on + strand, within Psyr_3683 at 4370.300 kb on + strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.306 kb on - strand, within Psyr_3683 at 4370.573 kb on + strand at 4370.573 kb on + strand at 4370.601 kb on - strand at 4370.632 kb on - strand at 4370.632 kb on - strand at 4370.639 kb on + strand at 4370.666 kb on + strand at 4371.382 kb on + strand at 4371.382 kb on + strand at 4371.382 kb on + strand at 4371.386 kb on + strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.400 kb on + strand at 4371.400 kb on + strand at 4371.409 kb on + strand at 4371.409 kb on + strand at 4371.410 kb on - strand at 4371.440 kb on - strand at 4371.450 kb on + strand at 4371.451 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml remove 4,368,999 + Psyr_3682 0.49 +0.3 4,368,999 + Psyr_3682 0.49 +0.3 4,368,999 + Psyr_3682 0.49 +1.4 4,369,000 - Psyr_3682 0.50 +0.2 4,369,000 - Psyr_3682 0.50 -0.9 4,369,000 - Psyr_3682 0.50 -1.5 4,369,218 + Psyr_3682 0.66 -1.5 4,369,219 - Psyr_3682 0.66 -0.8 4,369,219 - Psyr_3682 0.66 -0.4 4,369,249 - Psyr_3682 0.68 -0.8 4,369,266 + Psyr_3682 0.70 -0.6 4,369,266 + Psyr_3682 0.70 +2.0 4,369,266 + Psyr_3682 0.70 +1.7 4,369,267 - Psyr_3682 0.70 -1.5 4,369,267 - Psyr_3682 0.70 +0.2 4,369,267 - Psyr_3682 0.70 -1.7 4,369,267 - Psyr_3682 0.70 -0.5 4,369,681 - -0.2 4,369,776 - -0.8 4,369,863 + -1.6 4,369,863 + +0.9 4,369,864 - +1.3 4,369,918 + +0.1 4,369,919 - -1.2 4,370,000 + +0.2 4,370,054 + Psyr_3683 0.10 -0.1 4,370,054 + Psyr_3683 0.10 -0.5 4,370,054 + Psyr_3683 0.10 -1.3 4,370,055 - Psyr_3683 0.10 -1.4 4,370,055 - Psyr_3683 0.10 -0.3 4,370,144 + Psyr_3683 0.27 +0.1 4,370,144 + Psyr_3683 0.27 -1.0 4,370,144 + Psyr_3683 0.27 +1.2 4,370,144 + Psyr_3683 0.27 -0.6 4,370,144 + Psyr_3683 0.27 +0.1 4,370,144 + Psyr_3683 0.27 -0.7 4,370,144 + Psyr_3683 0.27 -0.6 4,370,144 + Psyr_3683 0.27 -1.2 4,370,145 - Psyr_3683 0.27 +0.2 4,370,145 - Psyr_3683 0.27 -0.3 4,370,145 - Psyr_3683 0.27 +1.1 4,370,145 - Psyr_3683 0.27 +0.1 4,370,145 - Psyr_3683 0.27 +0.5 4,370,145 - Psyr_3683 0.27 -0.8 4,370,145 - Psyr_3683 0.27 +1.3 4,370,145 - Psyr_3683 0.27 +0.5 4,370,145 - Psyr_3683 0.27 +0.7 4,370,145 - Psyr_3683 0.27 -0.1 4,370,145 - Psyr_3683 0.27 -0.3 4,370,145 - Psyr_3683 0.27 -0.1 4,370,145 - Psyr_3683 0.27 -1.9 4,370,145 - Psyr_3683 0.27 -0.3 4,370,300 + Psyr_3683 0.55 +0.8 4,370,300 + Psyr_3683 0.55 +2.2 4,370,306 - Psyr_3683 0.56 +0.0 4,370,306 - Psyr_3683 0.56 -0.2 4,370,306 - Psyr_3683 0.56 +0.6 4,370,306 - Psyr_3683 0.56 -0.1 4,370,306 - Psyr_3683 0.56 +0.5 4,370,306 - Psyr_3683 0.56 +1.0 4,370,573 + +4.3 4,370,573 + +1.7 4,370,601 - -0.6 4,370,632 - +1.0 4,370,632 - -1.7 4,370,639 + -0.5 4,370,666 + -0.1 4,371,382 + +0.6 4,371,382 + +0.2 4,371,382 + +0.6 4,371,386 + +0.2 4,371,387 - -0.6 4,371,387 - -1.1 4,371,387 - -0.1 4,371,387 - +0.1 4,371,387 - +0.3 4,371,387 - -0.0 4,371,400 + -1.3 4,371,400 + +0.3 4,371,409 + +0.3 4,371,409 + -1.1 4,371,410 - -1.3 4,371,440 - -0.8 4,371,450 + +0.0 4,371,451 - -1.7
Or see this region's nucleotide sequence