Experiment: KB with Novobiocin 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3649 and Psyr_3650 are separated by 85 nucleotides Psyr_3650 and Psyr_3651 are separated by 3 nucleotides Psyr_3651 and Psyr_3652 are separated by 12 nucleotides
Psyr_3649: Psyr_3649 - Amidohydrolase, at 4,334,816 to 4,336,147
_3649
Psyr_3650: Psyr_3650 - 3-demethylubiquinone-9 3-methyltransferase, at 4,336,233 to 4,336,931
_3650
Psyr_3651: Psyr_3651 - 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 4,336,935 to 4,337,606
_3651
Psyr_3652: Psyr_3652 - Short-chain dehydrogenase/reductase SDR, at 4,337,619 to 4,338,359
_3652
Position (kb) 4336
4337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4335.404 kb on + strand, within Psyr_3649 at 4335.404 kb on + strand, within Psyr_3649 at 4335.404 kb on + strand, within Psyr_3649 at 4335.405 kb on - strand, within Psyr_3649 at 4335.977 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.997 kb on + strand, within Psyr_3649 at 4335.998 kb on - strand, within Psyr_3649 at 4335.998 kb on - strand, within Psyr_3649 at 4335.998 kb on - strand, within Psyr_3649 at 4335.998 kb on - strand, within Psyr_3649 at 4335.998 kb on - strand, within Psyr_3649 at 4335.998 kb on - strand, within Psyr_3649 at 4335.998 kb on - strand, within Psyr_3649 at 4335.998 kb on - strand, within Psyr_3649 at 4335.998 kb on - strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4335.999 kb on + strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.000 kb on - strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.001 kb on + strand, within Psyr_3649 at 4336.002 kb on - strand, within Psyr_3649 at 4336.002 kb on - strand, within Psyr_3649 at 4336.002 kb on - strand, within Psyr_3649 at 4336.002 kb on - strand, within Psyr_3649 at 4336.002 kb on - strand, within Psyr_3649 at 4336.002 kb on - strand, within Psyr_3649 at 4336.126 kb on + strand at 4336.181 kb on + strand at 4336.181 kb on + strand at 4336.182 kb on - strand at 4336.182 kb on - strand at 4336.182 kb on - strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.185 kb on + strand at 4336.186 kb on - strand at 4336.186 kb on - strand at 4336.186 kb on - strand at 4336.186 kb on - strand at 4336.186 kb on - strand at 4336.187 kb on + strand at 4337.167 kb on - strand, within Psyr_3651 at 4337.503 kb on - strand, within Psyr_3651 at 4337.503 kb on - strand, within Psyr_3651 at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.628 kb on + strand at 4337.715 kb on + strand, within Psyr_3652 at 4337.715 kb on + strand, within Psyr_3652 at 4337.788 kb on + strand, within Psyr_3652 at 4337.789 kb on - strand, within Psyr_3652 at 4337.856 kb on + strand, within Psyr_3652
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml remove 4,335,404 + Psyr_3649 0.44 +0.1 4,335,404 + Psyr_3649 0.44 -1.3 4,335,404 + Psyr_3649 0.44 +0.1 4,335,405 - Psyr_3649 0.44 +0.5 4,335,977 + Psyr_3649 0.87 +1.8 4,335,997 + Psyr_3649 0.89 -0.5 4,335,997 + Psyr_3649 0.89 -0.4 4,335,997 + Psyr_3649 0.89 -0.9 4,335,997 + Psyr_3649 0.89 +2.3 4,335,997 + Psyr_3649 0.89 +0.3 4,335,997 + Psyr_3649 0.89 +0.5 4,335,997 + Psyr_3649 0.89 +1.3 4,335,997 + Psyr_3649 0.89 +0.9 4,335,997 + Psyr_3649 0.89 +1.4 4,335,997 + Psyr_3649 0.89 -0.8 4,335,997 + Psyr_3649 0.89 -0.0 4,335,997 + Psyr_3649 0.89 +0.4 4,335,997 + Psyr_3649 0.89 +0.4 4,335,997 + Psyr_3649 0.89 -0.3 4,335,997 + Psyr_3649 0.89 -0.2 4,335,998 - Psyr_3649 0.89 -3.5 4,335,998 - Psyr_3649 0.89 -1.8 4,335,998 - Psyr_3649 0.89 -0.0 4,335,998 - Psyr_3649 0.89 -1.3 4,335,998 - Psyr_3649 0.89 -0.0 4,335,998 - Psyr_3649 0.89 -1.0 4,335,998 - Psyr_3649 0.89 +0.4 4,335,998 - Psyr_3649 0.89 +1.4 4,335,998 - Psyr_3649 0.89 +1.1 4,335,999 + Psyr_3649 0.89 +0.3 4,335,999 + Psyr_3649 0.89 +0.4 4,335,999 + Psyr_3649 0.89 -0.4 4,335,999 + Psyr_3649 0.89 +0.2 4,335,999 + Psyr_3649 0.89 -0.8 4,335,999 + Psyr_3649 0.89 -0.7 4,335,999 + Psyr_3649 0.89 +0.9 4,335,999 + Psyr_3649 0.89 +0.1 4,335,999 + Psyr_3649 0.89 -0.2 4,335,999 + Psyr_3649 0.89 +0.2 4,335,999 + Psyr_3649 0.89 +0.1 4,335,999 + Psyr_3649 0.89 +0.2 4,335,999 + Psyr_3649 0.89 +1.6 4,335,999 + Psyr_3649 0.89 -0.0 4,336,000 - Psyr_3649 0.89 -1.0 4,336,000 - Psyr_3649 0.89 +4.0 4,336,000 - Psyr_3649 0.89 -0.9 4,336,000 - Psyr_3649 0.89 +0.3 4,336,000 - Psyr_3649 0.89 +0.4 4,336,000 - Psyr_3649 0.89 -0.2 4,336,000 - Psyr_3649 0.89 +1.0 4,336,000 - Psyr_3649 0.89 +1.5 4,336,000 - Psyr_3649 0.89 +0.4 4,336,000 - Psyr_3649 0.89 -1.3 4,336,000 - Psyr_3649 0.89 +1.2 4,336,000 - Psyr_3649 0.89 -2.3 4,336,000 - Psyr_3649 0.89 +0.6 4,336,001 + Psyr_3649 0.89 -1.8 4,336,001 + Psyr_3649 0.89 +0.1 4,336,001 + Psyr_3649 0.89 -0.7 4,336,001 + Psyr_3649 0.89 -0.1 4,336,001 + Psyr_3649 0.89 +0.1 4,336,001 + Psyr_3649 0.89 +0.5 4,336,001 + Psyr_3649 0.89 -1.5 4,336,001 + Psyr_3649 0.89 -0.9 4,336,001 + Psyr_3649 0.89 +0.2 4,336,001 + Psyr_3649 0.89 -1.0 4,336,001 + Psyr_3649 0.89 +1.3 4,336,001 + Psyr_3649 0.89 +0.5 4,336,002 - Psyr_3649 0.89 -1.8 4,336,002 - Psyr_3649 0.89 -0.3 4,336,002 - Psyr_3649 0.89 +0.1 4,336,002 - Psyr_3649 0.89 +1.7 4,336,002 - Psyr_3649 0.89 -1.8 4,336,002 - Psyr_3649 0.89 +1.1 4,336,126 + +0.4 4,336,181 + +0.1 4,336,181 + +1.0 4,336,182 - -0.5 4,336,182 - +0.4 4,336,182 - +0.6 4,336,185 + -1.9 4,336,185 + -0.4 4,336,185 + +0.9 4,336,185 + -1.6 4,336,185 + +0.4 4,336,185 + -0.6 4,336,185 + -0.0 4,336,185 + +0.3 4,336,185 + -0.2 4,336,185 + +0.6 4,336,185 + -0.4 4,336,185 + -0.6 4,336,185 + -0.2 4,336,185 + -0.7 4,336,185 + +0.1 4,336,186 - -0.9 4,336,186 - -0.8 4,336,186 - -0.4 4,336,186 - -0.9 4,336,186 - +4.3 4,336,187 + +0.2 4,337,167 - Psyr_3651 0.35 +2.4 4,337,503 - Psyr_3651 0.85 +1.1 4,337,503 - Psyr_3651 0.85 +2.5 4,337,616 + +0.4 4,337,616 + +0.5 4,337,616 + -0.5 4,337,616 + -0.2 4,337,616 + +1.3 4,337,616 + -0.5 4,337,616 + -1.1 4,337,616 + -2.3 4,337,616 + -0.5 4,337,617 - +1.4 4,337,617 - -0.5 4,337,617 - +0.2 4,337,617 - +0.1 4,337,617 - -0.1 4,337,617 - +0.4 4,337,617 - -0.8 4,337,617 - -1.2 4,337,617 - +0.4 4,337,617 - +0.6 4,337,628 + -0.9 4,337,715 + Psyr_3652 0.13 -0.1 4,337,715 + Psyr_3652 0.13 +1.5 4,337,788 + Psyr_3652 0.23 +1.9 4,337,789 - Psyr_3652 0.23 -0.3 4,337,856 + Psyr_3652 0.32 +3.0
Or see this region's nucleotide sequence