Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3649

Experiment: KB with Novobiocin 7.75 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3648 and Psyr_3649 are separated by 99 nucleotidesPsyr_3649 and Psyr_3650 are separated by 85 nucleotidesPsyr_3650 and Psyr_3651 are separated by 3 nucleotides Psyr_3648: Psyr_3648 - methylthioribose-1-phosphate isomerase, at 4,333,619 to 4,334,716 _3648 Psyr_3649: Psyr_3649 - Amidohydrolase, at 4,334,816 to 4,336,147 _3649 Psyr_3650: Psyr_3650 - 3-demethylubiquinone-9 3-methyltransferase, at 4,336,233 to 4,336,931 _3650 Psyr_3651: Psyr_3651 - 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 4,336,935 to 4,337,606 _3651 Position (kb) 4334 4335 4336 4337Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4333.839 kb on + strand, within Psyr_3648at 4333.915 kb on - strand, within Psyr_3648at 4333.919 kb on - strand, within Psyr_3648at 4334.502 kb on + strand, within Psyr_3648at 4334.503 kb on - strand, within Psyr_3648at 4334.503 kb on - strand, within Psyr_3648at 4334.581 kb on + strand, within Psyr_3648at 4334.582 kb on - strand, within Psyr_3648at 4334.582 kb on - strand, within Psyr_3648at 4334.631 kb on + strandat 4334.631 kb on + strandat 4334.747 kb on + strandat 4334.748 kb on - strandat 4334.748 kb on - strandat 4334.775 kb on + strandat 4334.777 kb on + strandat 4334.777 kb on + strandat 4334.777 kb on + strandat 4334.778 kb on - strandat 4334.793 kb on + strandat 4334.794 kb on - strandat 4334.794 kb on - strandat 4334.796 kb on + strandat 4334.796 kb on + strandat 4334.828 kb on - strandat 4334.936 kb on + strandat 4334.936 kb on + strandat 4334.936 kb on + strandat 4334.936 kb on + strandat 4334.936 kb on + strandat 4334.936 kb on + strandat 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.212 kb on + strand, within Psyr_3649at 4335.213 kb on - strand, within Psyr_3649at 4335.213 kb on - strand, within Psyr_3649at 4335.404 kb on + strand, within Psyr_3649at 4335.404 kb on + strand, within Psyr_3649at 4335.404 kb on + strand, within Psyr_3649at 4335.405 kb on - strand, within Psyr_3649at 4335.977 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.997 kb on + strand, within Psyr_3649at 4335.998 kb on - strand, within Psyr_3649at 4335.998 kb on - strand, within Psyr_3649at 4335.998 kb on - strand, within Psyr_3649at 4335.998 kb on - strand, within Psyr_3649at 4335.998 kb on - strand, within Psyr_3649at 4335.998 kb on - strand, within Psyr_3649at 4335.998 kb on - strand, within Psyr_3649at 4335.998 kb on - strand, within Psyr_3649at 4335.998 kb on - strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4335.999 kb on + strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.000 kb on - strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.001 kb on + strand, within Psyr_3649at 4336.002 kb on - strand, within Psyr_3649at 4336.002 kb on - strand, within Psyr_3649at 4336.002 kb on - strand, within Psyr_3649at 4336.002 kb on - strand, within Psyr_3649at 4336.002 kb on - strand, within Psyr_3649at 4336.002 kb on - strand, within Psyr_3649at 4336.126 kb on + strandat 4336.181 kb on + strandat 4336.181 kb on + strandat 4336.182 kb on - strandat 4336.182 kb on - strandat 4336.182 kb on - strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.185 kb on + strandat 4336.186 kb on - strandat 4336.186 kb on - strandat 4336.186 kb on - strandat 4336.186 kb on - strandat 4336.186 kb on - strandat 4336.187 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml
remove
4,333,839 + Psyr_3648 0.20 +0.9
4,333,915 - Psyr_3648 0.27 +0.1
4,333,919 - Psyr_3648 0.27 +0.1
4,334,502 + Psyr_3648 0.80 -0.0
4,334,503 - Psyr_3648 0.81 -0.2
4,334,503 - Psyr_3648 0.81 -1.3
4,334,581 + Psyr_3648 0.88 -0.2
4,334,582 - Psyr_3648 0.88 +0.0
4,334,582 - Psyr_3648 0.88 +2.0
4,334,631 + -1.3
4,334,631 + -1.5
4,334,747 + +0.4
4,334,748 - +0.1
4,334,748 - +0.8
4,334,775 + +0.3
4,334,777 + +0.1
4,334,777 + -0.1
4,334,777 + +1.3
4,334,778 - +0.4
4,334,793 + +0.2
4,334,794 - -0.0
4,334,794 - -0.7
4,334,796 + +0.4
4,334,796 + +0.7
4,334,828 - -0.4
4,334,936 + -1.3
4,334,936 + +0.1
4,334,936 + -0.4
4,334,936 + -0.3
4,334,936 + -0.9
4,334,936 + -0.9
4,335,212 + Psyr_3649 0.30 -0.4
4,335,212 + Psyr_3649 0.30 -0.2
4,335,212 + Psyr_3649 0.30 -0.0
4,335,212 + Psyr_3649 0.30 -1.1
4,335,212 + Psyr_3649 0.30 -1.2
4,335,212 + Psyr_3649 0.30 -2.0
4,335,212 + Psyr_3649 0.30 +0.8
4,335,212 + Psyr_3649 0.30 -0.5
4,335,212 + Psyr_3649 0.30 +1.0
4,335,212 + Psyr_3649 0.30 -1.3
4,335,212 + Psyr_3649 0.30 -1.0
4,335,212 + Psyr_3649 0.30 -0.7
4,335,212 + Psyr_3649 0.30 +0.9
4,335,212 + Psyr_3649 0.30 -3.4
4,335,212 + Psyr_3649 0.30 +0.0
4,335,212 + Psyr_3649 0.30 -0.2
4,335,212 + Psyr_3649 0.30 +0.6
4,335,212 + Psyr_3649 0.30 -1.7
4,335,212 + Psyr_3649 0.30 +0.3
4,335,212 + Psyr_3649 0.30 -0.2
4,335,212 + Psyr_3649 0.30 -1.0
4,335,213 - Psyr_3649 0.30 +1.0
4,335,213 - Psyr_3649 0.30 -0.3
4,335,404 + Psyr_3649 0.44 +0.1
4,335,404 + Psyr_3649 0.44 -1.3
4,335,404 + Psyr_3649 0.44 +0.1
4,335,405 - Psyr_3649 0.44 +0.5
4,335,977 + Psyr_3649 0.87 +1.8
4,335,997 + Psyr_3649 0.89 -0.5
4,335,997 + Psyr_3649 0.89 -0.4
4,335,997 + Psyr_3649 0.89 -0.9
4,335,997 + Psyr_3649 0.89 +2.3
4,335,997 + Psyr_3649 0.89 +0.3
4,335,997 + Psyr_3649 0.89 +0.5
4,335,997 + Psyr_3649 0.89 +1.3
4,335,997 + Psyr_3649 0.89 +0.9
4,335,997 + Psyr_3649 0.89 +1.4
4,335,997 + Psyr_3649 0.89 -0.8
4,335,997 + Psyr_3649 0.89 -0.0
4,335,997 + Psyr_3649 0.89 +0.4
4,335,997 + Psyr_3649 0.89 +0.4
4,335,997 + Psyr_3649 0.89 -0.3
4,335,997 + Psyr_3649 0.89 -0.2
4,335,998 - Psyr_3649 0.89 -3.5
4,335,998 - Psyr_3649 0.89 -1.8
4,335,998 - Psyr_3649 0.89 -0.0
4,335,998 - Psyr_3649 0.89 -1.3
4,335,998 - Psyr_3649 0.89 -0.0
4,335,998 - Psyr_3649 0.89 -1.0
4,335,998 - Psyr_3649 0.89 +0.4
4,335,998 - Psyr_3649 0.89 +1.4
4,335,998 - Psyr_3649 0.89 +1.1
4,335,999 + Psyr_3649 0.89 +0.3
4,335,999 + Psyr_3649 0.89 +0.4
4,335,999 + Psyr_3649 0.89 -0.4
4,335,999 + Psyr_3649 0.89 +0.2
4,335,999 + Psyr_3649 0.89 -0.8
4,335,999 + Psyr_3649 0.89 -0.7
4,335,999 + Psyr_3649 0.89 +0.9
4,335,999 + Psyr_3649 0.89 +0.1
4,335,999 + Psyr_3649 0.89 -0.2
4,335,999 + Psyr_3649 0.89 +0.2
4,335,999 + Psyr_3649 0.89 +0.1
4,335,999 + Psyr_3649 0.89 +0.2
4,335,999 + Psyr_3649 0.89 +1.6
4,335,999 + Psyr_3649 0.89 -0.0
4,336,000 - Psyr_3649 0.89 -1.0
4,336,000 - Psyr_3649 0.89 +4.0
4,336,000 - Psyr_3649 0.89 -0.9
4,336,000 - Psyr_3649 0.89 +0.3
4,336,000 - Psyr_3649 0.89 +0.4
4,336,000 - Psyr_3649 0.89 -0.2
4,336,000 - Psyr_3649 0.89 +1.0
4,336,000 - Psyr_3649 0.89 +1.5
4,336,000 - Psyr_3649 0.89 +0.4
4,336,000 - Psyr_3649 0.89 -1.3
4,336,000 - Psyr_3649 0.89 +1.2
4,336,000 - Psyr_3649 0.89 -2.3
4,336,000 - Psyr_3649 0.89 +0.6
4,336,001 + Psyr_3649 0.89 -1.8
4,336,001 + Psyr_3649 0.89 +0.1
4,336,001 + Psyr_3649 0.89 -0.7
4,336,001 + Psyr_3649 0.89 -0.1
4,336,001 + Psyr_3649 0.89 +0.1
4,336,001 + Psyr_3649 0.89 +0.5
4,336,001 + Psyr_3649 0.89 -1.5
4,336,001 + Psyr_3649 0.89 -0.9
4,336,001 + Psyr_3649 0.89 +0.2
4,336,001 + Psyr_3649 0.89 -1.0
4,336,001 + Psyr_3649 0.89 +1.3
4,336,001 + Psyr_3649 0.89 +0.5
4,336,002 - Psyr_3649 0.89 -1.8
4,336,002 - Psyr_3649 0.89 -0.3
4,336,002 - Psyr_3649 0.89 +0.1
4,336,002 - Psyr_3649 0.89 +1.7
4,336,002 - Psyr_3649 0.89 -1.8
4,336,002 - Psyr_3649 0.89 +1.1
4,336,126 + +0.4
4,336,181 + +0.1
4,336,181 + +1.0
4,336,182 - -0.5
4,336,182 - +0.4
4,336,182 - +0.6
4,336,185 + -1.9
4,336,185 + -0.4
4,336,185 + +0.9
4,336,185 + -1.6
4,336,185 + +0.4
4,336,185 + -0.6
4,336,185 + -0.0
4,336,185 + +0.3
4,336,185 + -0.2
4,336,185 + +0.6
4,336,185 + -0.4
4,336,185 + -0.6
4,336,185 + -0.2
4,336,185 + -0.7
4,336,185 + +0.1
4,336,186 - -0.9
4,336,186 - -0.8
4,336,186 - -0.4
4,336,186 - -0.9
4,336,186 - +4.3
4,336,187 + +0.2

Or see this region's nucleotide sequence