Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3632

Experiment: KB with Novobiocin 7.75 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3630 and Psyr_3631 are separated by 3 nucleotidesPsyr_3631 and Psyr_3632 are separated by 123 nucleotidesPsyr_3632 and Psyr_3633 are separated by 72 nucleotides Psyr_3630: Psyr_3630 - conserved hypothetical protein, at 4,312,730 to 4,313,128 _3630 Psyr_3631: Psyr_3631 - GreA/GreB family elongation factor, at 4,313,132 to 4,313,614 _3631 Psyr_3632: Psyr_3632 - conserved hypothetical protein, at 4,313,738 to 4,313,944 _3632 Psyr_3633: Psyr_3633 - threonine/serine transporter, at 4,314,017 to 4,315,294 _3633 Position (kb) 4313 4314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4312.760 kb on + strandat 4312.760 kb on + strandat 4312.760 kb on + strandat 4312.760 kb on + strandat 4312.761 kb on - strandat 4312.761 kb on - strandat 4312.761 kb on - strandat 4312.841 kb on + strand, within Psyr_3630at 4312.842 kb on - strand, within Psyr_3630at 4312.844 kb on + strand, within Psyr_3630at 4312.844 kb on + strand, within Psyr_3630at 4312.845 kb on - strand, within Psyr_3630at 4312.845 kb on - strand, within Psyr_3630at 4312.845 kb on - strand, within Psyr_3630at 4312.964 kb on + strand, within Psyr_3630at 4312.964 kb on + strand, within Psyr_3630at 4312.964 kb on + strand, within Psyr_3630at 4312.965 kb on - strand, within Psyr_3630at 4312.965 kb on - strand, within Psyr_3630at 4313.117 kb on + strandat 4313.118 kb on - strandat 4313.148 kb on + strandat 4313.148 kb on + strandat 4313.149 kb on - strandat 4313.149 kb on - strandat 4313.149 kb on - strandat 4313.149 kb on - strandat 4313.149 kb on - strandat 4313.258 kb on + strand, within Psyr_3631at 4313.258 kb on + strand, within Psyr_3631at 4313.259 kb on - strand, within Psyr_3631at 4313.259 kb on - strand, within Psyr_3631at 4313.259 kb on - strand, within Psyr_3631at 4313.268 kb on + strand, within Psyr_3631at 4313.285 kb on + strand, within Psyr_3631at 4313.342 kb on + strand, within Psyr_3631at 4313.435 kb on + strand, within Psyr_3631at 4313.436 kb on - strand, within Psyr_3631at 4313.436 kb on - strand, within Psyr_3631at 4313.436 kb on - strand, within Psyr_3631at 4313.436 kb on - strand, within Psyr_3631at 4313.436 kb on - strand, within Psyr_3631at 4313.436 kb on - strand, within Psyr_3631at 4313.559 kb on + strand, within Psyr_3631at 4313.718 kb on - strandat 4313.813 kb on + strand, within Psyr_3632at 4313.813 kb on + strand, within Psyr_3632at 4313.814 kb on - strand, within Psyr_3632at 4313.879 kb on + strand, within Psyr_3632at 4313.879 kb on + strand, within Psyr_3632at 4313.880 kb on - strand, within Psyr_3632at 4313.880 kb on - strand, within Psyr_3632at 4313.880 kb on - strand, within Psyr_3632at 4313.880 kb on - strand, within Psyr_3632at 4313.886 kb on - strand, within Psyr_3632at 4313.886 kb on - strand, within Psyr_3632at 4313.891 kb on + strand, within Psyr_3632at 4313.891 kb on + strand, within Psyr_3632at 4313.892 kb on - strand, within Psyr_3632at 4313.925 kb on - strandat 4314.078 kb on + strandat 4314.078 kb on + strandat 4314.078 kb on + strandat 4314.078 kb on + strandat 4314.078 kb on + strandat 4314.079 kb on - strandat 4314.079 kb on - strandat 4314.099 kb on + strandat 4314.100 kb on - strandat 4314.100 kb on - strandat 4314.103 kb on + strandat 4314.103 kb on + strandat 4314.103 kb on + strandat 4314.103 kb on + strandat 4314.104 kb on - strandat 4314.104 kb on - strandat 4314.104 kb on - strandat 4314.104 kb on - strandat 4314.104 kb on - strandat 4314.104 kb on - strandat 4314.104 kb on - strandat 4314.116 kb on + strandat 4314.116 kb on + strandat 4314.132 kb on + strandat 4314.133 kb on - strandat 4314.133 kb on - strandat 4314.333 kb on + strand, within Psyr_3633at 4314.333 kb on + strand, within Psyr_3633at 4314.333 kb on + strand, within Psyr_3633at 4314.333 kb on + strand, within Psyr_3633at 4314.333 kb on + strand, within Psyr_3633at 4314.334 kb on - strand, within Psyr_3633at 4314.334 kb on - strand, within Psyr_3633at 4314.423 kb on + strand, within Psyr_3633at 4314.424 kb on - strand, within Psyr_3633at 4314.424 kb on - strand, within Psyr_3633at 4314.700 kb on + strand, within Psyr_3633at 4314.743 kb on + strand, within Psyr_3633at 4314.743 kb on + strand, within Psyr_3633at 4314.743 kb on + strand, within Psyr_3633at 4314.759 kb on - strand, within Psyr_3633at 4314.759 kb on - strand, within Psyr_3633at 4314.939 kb on + strand, within Psyr_3633at 4314.939 kb on + strand, within Psyr_3633

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml
remove
4,312,760 + -0.2
4,312,760 + +2.6
4,312,760 + -1.1
4,312,760 + +0.1
4,312,761 - +0.5
4,312,761 - -1.0
4,312,761 - +0.4
4,312,841 + Psyr_3630 0.28 +0.2
4,312,842 - Psyr_3630 0.28 -0.8
4,312,844 + Psyr_3630 0.29 -1.8
4,312,844 + Psyr_3630 0.29 +0.0
4,312,845 - Psyr_3630 0.29 +0.7
4,312,845 - Psyr_3630 0.29 +0.1
4,312,845 - Psyr_3630 0.29 +0.1
4,312,964 + Psyr_3630 0.59 -0.2
4,312,964 + Psyr_3630 0.59 +1.4
4,312,964 + Psyr_3630 0.59 +0.4
4,312,965 - Psyr_3630 0.59 -0.2
4,312,965 - Psyr_3630 0.59 -0.7
4,313,117 + -0.5
4,313,118 - -0.4
4,313,148 + -1.3
4,313,148 + +1.0
4,313,149 - -0.3
4,313,149 - +0.1
4,313,149 - +0.8
4,313,149 - -1.3
4,313,149 - +0.0
4,313,258 + Psyr_3631 0.26 +2.2
4,313,258 + Psyr_3631 0.26 -0.7
4,313,259 - Psyr_3631 0.26 -1.8
4,313,259 - Psyr_3631 0.26 -1.0
4,313,259 - Psyr_3631 0.26 -0.4
4,313,268 + Psyr_3631 0.28 -1.5
4,313,285 + Psyr_3631 0.32 +0.7
4,313,342 + Psyr_3631 0.43 -2.6
4,313,435 + Psyr_3631 0.63 -2.1
4,313,436 - Psyr_3631 0.63 -3.2
4,313,436 - Psyr_3631 0.63 -1.2
4,313,436 - Psyr_3631 0.63 -0.7
4,313,436 - Psyr_3631 0.63 -0.9
4,313,436 - Psyr_3631 0.63 -2.0
4,313,436 - Psyr_3631 0.63 -1.4
4,313,559 + Psyr_3631 0.88 +3.2
4,313,718 - +0.3
4,313,813 + Psyr_3632 0.36 +1.7
4,313,813 + Psyr_3632 0.36 -0.2
4,313,814 - Psyr_3632 0.37 -1.0
4,313,879 + Psyr_3632 0.68 +0.9
4,313,879 + Psyr_3632 0.68 -0.3
4,313,880 - Psyr_3632 0.69 -1.6
4,313,880 - Psyr_3632 0.69 -1.7
4,313,880 - Psyr_3632 0.69 -1.4
4,313,880 - Psyr_3632 0.69 -2.3
4,313,886 - Psyr_3632 0.71 -0.2
4,313,886 - Psyr_3632 0.71 -0.8
4,313,891 + Psyr_3632 0.74 -0.5
4,313,891 + Psyr_3632 0.74 +0.3
4,313,892 - Psyr_3632 0.74 -3.2
4,313,925 - -2.3
4,314,078 + -0.6
4,314,078 + -1.8
4,314,078 + -0.0
4,314,078 + +1.0
4,314,078 + -0.2
4,314,079 - -1.3
4,314,079 - -1.6
4,314,099 + -0.1
4,314,100 - -0.1
4,314,100 - -0.5
4,314,103 + -0.2
4,314,103 + +1.0
4,314,103 + -0.2
4,314,103 + -0.2
4,314,104 - -0.6
4,314,104 - -0.2
4,314,104 - -0.8
4,314,104 - +0.8
4,314,104 - +0.5
4,314,104 - +1.1
4,314,104 - -0.9
4,314,116 + -0.1
4,314,116 + -0.3
4,314,132 + +0.8
4,314,133 - -1.6
4,314,133 - +1.0
4,314,333 + Psyr_3633 0.25 +0.3
4,314,333 + Psyr_3633 0.25 -2.0
4,314,333 + Psyr_3633 0.25 -2.2
4,314,333 + Psyr_3633 0.25 +0.6
4,314,333 + Psyr_3633 0.25 -1.3
4,314,334 - Psyr_3633 0.25 -0.5
4,314,334 - Psyr_3633 0.25 -0.4
4,314,423 + Psyr_3633 0.32 -1.1
4,314,424 - Psyr_3633 0.32 -0.4
4,314,424 - Psyr_3633 0.32 -0.3
4,314,700 + Psyr_3633 0.53 +0.5
4,314,743 + Psyr_3633 0.57 +0.4
4,314,743 + Psyr_3633 0.57 -0.0
4,314,743 + Psyr_3633 0.57 -0.2
4,314,759 - Psyr_3633 0.58 -1.0
4,314,759 - Psyr_3633 0.58 -1.3
4,314,939 + Psyr_3633 0.72 +0.4
4,314,939 + Psyr_3633 0.72 -0.6

Or see this region's nucleotide sequence