Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1631

Experiment: KB with Novobiocin 7.75 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1630 and Psyr_1631 overlap by 4 nucleotidesPsyr_1631 and Psyr_1632 are separated by 136 nucleotides Psyr_1630: Psyr_1630 - ABC transporter, at 1,833,861 to 1,834,793 _1630 Psyr_1631: Psyr_1631 - ABC-2, at 1,834,790 to 1,835,578 _1631 Psyr_1632: Psyr_1632 - ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2, at 1,835,715 to 1,837,931 _1632 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1833.848 kb on + strandat 1833.848 kb on + strandat 1833.849 kb on - strandat 1833.860 kb on + strandat 1833.860 kb on + strandat 1833.900 kb on + strandat 1833.901 kb on - strandat 1833.901 kb on - strandat 1834.176 kb on + strand, within Psyr_1630at 1834.372 kb on + strand, within Psyr_1630at 1834.443 kb on + strand, within Psyr_1630at 1834.724 kb on + strandat 1834.724 kb on + strandat 1834.725 kb on - strandat 1834.789 kb on + strandat 1834.919 kb on + strand, within Psyr_1631at 1834.919 kb on + strand, within Psyr_1631at 1834.919 kb on + strand, within Psyr_1631at 1834.919 kb on + strand, within Psyr_1631at 1834.920 kb on - strand, within Psyr_1631at 1834.920 kb on - strand, within Psyr_1631at 1834.975 kb on + strand, within Psyr_1631at 1834.975 kb on + strand, within Psyr_1631at 1834.979 kb on + strand, within Psyr_1631at 1834.979 kb on + strand, within Psyr_1631at 1834.979 kb on + strand, within Psyr_1631at 1834.979 kb on + strand, within Psyr_1631at 1834.979 kb on + strand, within Psyr_1631at 1834.979 kb on + strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1835.148 kb on + strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.355 kb on - strand, within Psyr_1631at 1835.372 kb on + strand, within Psyr_1631at 1835.373 kb on - strand, within Psyr_1631at 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.566 kb on + strandat 1835.837 kb on + strandat 1836.215 kb on - strand, within Psyr_1632at 1836.426 kb on + strand, within Psyr_1632

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml
remove
1,833,848 + -1.4
1,833,848 + -1.6
1,833,849 - +1.1
1,833,860 + -0.4
1,833,860 + -2.1
1,833,900 + -0.3
1,833,901 - -0.1
1,833,901 - +2.6
1,834,176 + Psyr_1630 0.34 -1.2
1,834,372 + Psyr_1630 0.55 +0.1
1,834,443 + Psyr_1630 0.62 -1.6
1,834,724 + -0.4
1,834,724 + -0.4
1,834,725 - -0.5
1,834,789 + -0.6
1,834,919 + Psyr_1631 0.16 +0.6
1,834,919 + Psyr_1631 0.16 +0.2
1,834,919 + Psyr_1631 0.16 +0.9
1,834,919 + Psyr_1631 0.16 -0.9
1,834,920 - Psyr_1631 0.16 +0.1
1,834,920 - Psyr_1631 0.16 -0.6
1,834,975 + Psyr_1631 0.23 -0.6
1,834,975 + Psyr_1631 0.23 -1.3
1,834,979 + Psyr_1631 0.24 +0.4
1,834,979 + Psyr_1631 0.24 +0.2
1,834,979 + Psyr_1631 0.24 +0.9
1,834,979 + Psyr_1631 0.24 -1.1
1,834,979 + Psyr_1631 0.24 +0.4
1,834,979 + Psyr_1631 0.24 +0.8
1,834,980 - Psyr_1631 0.24 +0.5
1,834,980 - Psyr_1631 0.24 +0.4
1,834,980 - Psyr_1631 0.24 -0.1
1,834,980 - Psyr_1631 0.24 -0.6
1,834,980 - Psyr_1631 0.24 -0.3
1,834,988 + Psyr_1631 0.25 +0.7
1,834,988 + Psyr_1631 0.25 +1.6
1,834,988 + Psyr_1631 0.25 +0.2
1,834,988 + Psyr_1631 0.25 +1.4
1,834,988 + Psyr_1631 0.25 +2.9
1,834,988 + Psyr_1631 0.25 +0.9
1,834,988 + Psyr_1631 0.25 -1.3
1,834,988 + Psyr_1631 0.25 +0.8
1,834,989 - Psyr_1631 0.25 +0.6
1,834,989 - Psyr_1631 0.25 +0.7
1,834,989 - Psyr_1631 0.25 +0.2
1,834,989 - Psyr_1631 0.25 +0.1
1,834,989 - Psyr_1631 0.25 -0.9
1,834,989 - Psyr_1631 0.25 +2.1
1,834,989 - Psyr_1631 0.25 -1.4
1,834,989 - Psyr_1631 0.25 +0.6
1,834,989 - Psyr_1631 0.25 +0.1
1,834,989 - Psyr_1631 0.25 +0.8
1,835,148 + Psyr_1631 0.45 +0.2
1,835,149 - Psyr_1631 0.46 -1.8
1,835,214 + Psyr_1631 0.54 -0.5
1,835,214 + Psyr_1631 0.54 +0.1
1,835,214 + Psyr_1631 0.54 -2.6
1,835,214 + Psyr_1631 0.54 -1.1
1,835,214 + Psyr_1631 0.54 +0.3
1,835,214 + Psyr_1631 0.54 +0.3
1,835,214 + Psyr_1631 0.54 -0.5
1,835,214 + Psyr_1631 0.54 -0.6
1,835,215 - Psyr_1631 0.54 +0.7
1,835,215 - Psyr_1631 0.54 +0.2
1,835,215 - Psyr_1631 0.54 +0.8
1,835,215 - Psyr_1631 0.54 -0.9
1,835,215 - Psyr_1631 0.54 -1.3
1,835,215 - Psyr_1631 0.54 +0.8
1,835,355 - Psyr_1631 0.72 -0.6
1,835,372 + Psyr_1631 0.74 +1.3
1,835,373 - Psyr_1631 0.74 -0.9
1,835,528 + +0.9
1,835,528 + -0.8
1,835,528 + +0.5
1,835,528 + +0.1
1,835,528 + +0.1
1,835,528 + +0.9
1,835,529 - -0.4
1,835,529 - +0.4
1,835,529 - +0.4
1,835,529 - +0.7
1,835,529 - +0.5
1,835,566 + +1.0
1,835,837 + +0.1
1,836,215 - Psyr_1632 0.23 +0.7
1,836,426 + Psyr_1632 0.32 +0.1

Or see this region's nucleotide sequence