Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1628

Experiment: KB with Novobiocin 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1626 and Psyr_1627 are separated by 190 nucleotidesPsyr_1627 and Psyr_1628 are separated by 76 nucleotidesPsyr_1628 and Psyr_1629 are separated by 160 nucleotidesPsyr_1629 and Psyr_1630 are separated by 183 nucleotides Psyr_1626: Psyr_1626 - Pirin, N-terminal:Pirin, C-terminal, at 1,828,914 to 1,829,768 _1626 Psyr_1627: Psyr_1627 - conserved hypothetical protein, at 1,829,959 to 1,830,369 _1627 Psyr_1628: Psyr_1628 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, N-terminal, at 1,830,446 to 1,832,893 _1628 Psyr_1629: Psyr_1629 - Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal, at 1,833,054 to 1,833,677 _1629 Psyr_1630: Psyr_1630 - ABC transporter, at 1,833,861 to 1,834,793 _1630 Position (kb) 1830 1831 1832 1833Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.788 kb on - strandat 1829.797 kb on + strandat 1829.798 kb on - strandat 1829.812 kb on + strandat 1830.405 kb on + strandat 1830.405 kb on + strandat 1830.405 kb on + strandat 1830.406 kb on - strandat 1830.406 kb on - strandat 1830.407 kb on + strandat 1830.407 kb on + strandat 1830.407 kb on + strandat 1830.408 kb on - strandat 1830.408 kb on - strandat 1830.444 kb on + strandat 1830.445 kb on - strandat 1830.848 kb on + strand, within Psyr_1628at 1831.017 kb on + strand, within Psyr_1628at 1831.017 kb on + strand, within Psyr_1628at 1831.017 kb on + strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.149 kb on + strand, within Psyr_1628at 1831.440 kb on + strand, within Psyr_1628at 1831.441 kb on - strand, within Psyr_1628at 1831.441 kb on - strand, within Psyr_1628at 1831.498 kb on + strand, within Psyr_1628at 1831.527 kb on + strand, within Psyr_1628at 1831.527 kb on + strand, within Psyr_1628at 1831.528 kb on - strand, within Psyr_1628at 1831.722 kb on + strand, within Psyr_1628at 1831.722 kb on + strand, within Psyr_1628at 1831.722 kb on + strand, within Psyr_1628at 1831.722 kb on + strand, within Psyr_1628at 1831.722 kb on + strand, within Psyr_1628at 1831.722 kb on + strand, within Psyr_1628at 1831.723 kb on - strand, within Psyr_1628at 1832.049 kb on + strand, within Psyr_1628at 1832.049 kb on + strand, within Psyr_1628at 1832.050 kb on - strand, within Psyr_1628at 1832.050 kb on - strand, within Psyr_1628at 1832.211 kb on + strand, within Psyr_1628at 1832.211 kb on + strand, within Psyr_1628at 1832.212 kb on - strand, within Psyr_1628at 1832.212 kb on - strand, within Psyr_1628at 1832.212 kb on - strand, within Psyr_1628at 1832.212 kb on - strand, within Psyr_1628at 1832.343 kb on + strand, within Psyr_1628at 1832.780 kb on - strandat 1832.797 kb on - strandat 1832.804 kb on + strandat 1832.893 kb on + strandat 1832.893 kb on + strandat 1832.893 kb on + strandat 1832.893 kb on + strandat 1832.893 kb on + strandat 1832.894 kb on - strandat 1832.894 kb on - strandat 1832.894 kb on - strandat 1832.894 kb on - strandat 1832.894 kb on - strandat 1832.894 kb on - strandat 1832.894 kb on - strandat 1832.894 kb on - strandat 1832.897 kb on + strandat 1832.897 kb on + strandat 1832.897 kb on + strandat 1832.897 kb on + strandat 1832.897 kb on + strandat 1832.897 kb on + strandat 1832.897 kb on + strandat 1832.898 kb on - strandat 1832.898 kb on - strandat 1832.898 kb on - strandat 1832.898 kb on - strandat 1832.898 kb on - strandat 1833.005 kb on - strandat 1833.025 kb on + strandat 1833.025 kb on + strandat 1833.026 kb on - strandat 1833.026 kb on - strandat 1833.026 kb on - strandat 1833.030 kb on - strandat 1833.301 kb on + strand, within Psyr_1629at 1833.562 kb on - strand, within Psyr_1629at 1833.618 kb on + strandat 1833.735 kb on + strandat 1833.735 kb on + strandat 1833.735 kb on + strandat 1833.735 kb on + strandat 1833.736 kb on - strandat 1833.736 kb on - strandat 1833.736 kb on - strandat 1833.736 kb on - strandat 1833.736 kb on - strandat 1833.738 kb on + strandat 1833.738 kb on + strandat 1833.738 kb on + strandat 1833.739 kb on - strandat 1833.742 kb on - strandat 1833.756 kb on + strandat 1833.848 kb on + strandat 1833.848 kb on + strandat 1833.849 kb on - strandat 1833.860 kb on + strandat 1833.860 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml
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1,829,560 + Psyr_1626 0.76 +0.6
1,829,560 + Psyr_1626 0.76 -0.0
1,829,560 + Psyr_1626 0.76 +0.1
1,829,560 + Psyr_1626 0.76 -0.5
1,829,560 + Psyr_1626 0.76 -0.0
1,829,560 + Psyr_1626 0.76 -1.9
1,829,560 + Psyr_1626 0.76 -1.2
1,829,560 + Psyr_1626 0.76 -0.6
1,829,560 + Psyr_1626 0.76 +0.1
1,829,560 + Psyr_1626 0.76 +3.2
1,829,560 + Psyr_1626 0.76 +0.7
1,829,560 + Psyr_1626 0.76 +0.8
1,829,560 + Psyr_1626 0.76 -0.2
1,829,561 - Psyr_1626 0.76 -0.1
1,829,561 - Psyr_1626 0.76 -0.3
1,829,561 - Psyr_1626 0.76 -1.2
1,829,561 - Psyr_1626 0.76 +1.1
1,829,561 - Psyr_1626 0.76 +0.6
1,829,561 - Psyr_1626 0.76 -0.2
1,829,561 - Psyr_1626 0.76 -0.8
1,829,561 - Psyr_1626 0.76 +1.8
1,829,611 + Psyr_1626 0.82 -2.1
1,829,611 + Psyr_1626 0.82 -0.1
1,829,611 + Psyr_1626 0.82 +0.6
1,829,611 + Psyr_1626 0.82 +1.1
1,829,611 + Psyr_1626 0.82 -0.1
1,829,612 - Psyr_1626 0.82 +0.1
1,829,612 - Psyr_1626 0.82 +0.1
1,829,612 - Psyr_1626 0.82 -1.6
1,829,612 - Psyr_1626 0.82 +0.1
1,829,788 - -1.3
1,829,797 + +0.1
1,829,798 - +0.3
1,829,812 + -0.6
1,830,405 + -0.9
1,830,405 + -0.3
1,830,405 + -1.2
1,830,406 - -0.1
1,830,406 - -0.3
1,830,407 + +0.9
1,830,407 + -0.5
1,830,407 + +0.5
1,830,408 - -1.1
1,830,408 - -2.1
1,830,444 + +0.7
1,830,445 - -0.8
1,830,848 + Psyr_1628 0.16 -0.4
1,831,017 + Psyr_1628 0.23 -0.5
1,831,017 + Psyr_1628 0.23 -0.5
1,831,017 + Psyr_1628 0.23 +0.8
1,831,018 - Psyr_1628 0.23 -0.9
1,831,018 - Psyr_1628 0.23 -0.6
1,831,018 - Psyr_1628 0.23 +0.8
1,831,149 + Psyr_1628 0.29 -0.8
1,831,440 + Psyr_1628 0.41 -0.5
1,831,441 - Psyr_1628 0.41 -0.1
1,831,441 - Psyr_1628 0.41 -0.6
1,831,498 + Psyr_1628 0.43 -0.8
1,831,527 + Psyr_1628 0.44 -0.5
1,831,527 + Psyr_1628 0.44 -0.9
1,831,528 - Psyr_1628 0.44 -0.8
1,831,722 + Psyr_1628 0.52 +1.1
1,831,722 + Psyr_1628 0.52 +0.2
1,831,722 + Psyr_1628 0.52 -1.5
1,831,722 + Psyr_1628 0.52 -1.9
1,831,722 + Psyr_1628 0.52 +0.5
1,831,722 + Psyr_1628 0.52 -1.0
1,831,723 - Psyr_1628 0.52 +0.7
1,832,049 + Psyr_1628 0.65 -0.5
1,832,049 + Psyr_1628 0.65 -1.5
1,832,050 - Psyr_1628 0.66 -0.6
1,832,050 - Psyr_1628 0.66 -0.4
1,832,211 + Psyr_1628 0.72 -0.1
1,832,211 + Psyr_1628 0.72 +0.2
1,832,212 - Psyr_1628 0.72 +2.6
1,832,212 - Psyr_1628 0.72 -2.9
1,832,212 - Psyr_1628 0.72 -0.1
1,832,212 - Psyr_1628 0.72 +1.8
1,832,343 + Psyr_1628 0.77 +0.1
1,832,780 - -0.2
1,832,797 - -0.3
1,832,804 + -0.2
1,832,893 + +1.1
1,832,893 + +0.3
1,832,893 + +1.2
1,832,893 + -0.4
1,832,893 + +0.6
1,832,894 - +0.1
1,832,894 - +1.2
1,832,894 - -0.9
1,832,894 - +0.5
1,832,894 - -0.6
1,832,894 - -1.8
1,832,894 - +0.5
1,832,894 - -0.2
1,832,897 + +0.3
1,832,897 + -2.1
1,832,897 + +0.0
1,832,897 + +0.5
1,832,897 + +0.7
1,832,897 + -1.2
1,832,897 + +0.5
1,832,898 - +1.2
1,832,898 - +2.6
1,832,898 - -1.7
1,832,898 - +0.6
1,832,898 - +0.8
1,833,005 - +0.2
1,833,025 + +0.5
1,833,025 + +0.6
1,833,026 - -0.2
1,833,026 - +0.6
1,833,026 - -0.2
1,833,030 - +1.5
1,833,301 + Psyr_1629 0.40 -0.1
1,833,562 - Psyr_1629 0.81 +0.2
1,833,618 + +0.5
1,833,735 + +1.1
1,833,735 + -0.5
1,833,735 + +1.7
1,833,735 + -0.1
1,833,736 - +0.8
1,833,736 - -0.3
1,833,736 - -0.5
1,833,736 - -0.5
1,833,736 - +1.3
1,833,738 + -1.2
1,833,738 + +1.6
1,833,738 + +0.5
1,833,739 - +1.1
1,833,742 - +2.1
1,833,756 + -0.4
1,833,848 + -1.4
1,833,848 + -1.6
1,833,849 - +1.1
1,833,860 + -0.4
1,833,860 + -2.1

Or see this region's nucleotide sequence