Experiment: KB with Novobiocin 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0973 and Psyr_0974 overlap by 4 nucleotides Psyr_0974 and Psyr_0975 are separated by 74 nucleotides
Psyr_0973: Psyr_0973 - amino acid ABC transporter membrane protein, PAAT family, at 1,105,608 to 1,106,450
_0973
Psyr_0974: Psyr_0974 - amino acid ABC transporter substrate-binding protein, PAAT family, at 1,106,447 to 1,107,268
_0974
Psyr_0975: Psyr_0975 - homocysteine S-methyltransferase, at 1,107,343 to 1,108,275
_0975
Position (kb) 1106
1107
1108 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1105.503 kb on - strand at 1105.504 kb on + strand at 1105.504 kb on + strand at 1105.504 kb on + strand at 1105.505 kb on - strand at 1105.505 kb on - strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.569 kb on + strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.570 kb on - strand at 1105.572 kb on - strand at 1105.624 kb on + strand at 1105.691 kb on - strand at 1105.723 kb on + strand, within Psyr_0973 at 1105.723 kb on + strand, within Psyr_0973 at 1105.723 kb on + strand, within Psyr_0973 at 1105.723 kb on + strand, within Psyr_0973 at 1105.723 kb on + strand, within Psyr_0973 at 1105.724 kb on - strand, within Psyr_0973 at 1105.730 kb on - strand, within Psyr_0973 at 1105.972 kb on + strand, within Psyr_0973 at 1105.972 kb on + strand, within Psyr_0973 at 1105.982 kb on - strand, within Psyr_0973 at 1106.053 kb on + strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.054 kb on - strand, within Psyr_0973 at 1106.104 kb on + strand, within Psyr_0973 at 1106.105 kb on - strand, within Psyr_0973 at 1106.105 kb on - strand, within Psyr_0973 at 1106.357 kb on - strand, within Psyr_0973 at 1106.357 kb on - strand, within Psyr_0973 at 1106.589 kb on + strand, within Psyr_0974 at 1106.590 kb on - strand, within Psyr_0974 at 1106.727 kb on + strand, within Psyr_0974 at 1106.728 kb on - strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.741 kb on + strand, within Psyr_0974 at 1106.742 kb on - strand, within Psyr_0974 at 1106.757 kb on + strand, within Psyr_0974 at 1106.875 kb on + strand, within Psyr_0974 at 1106.876 kb on - strand, within Psyr_0974 at 1106.919 kb on + strand, within Psyr_0974 at 1106.919 kb on + strand, within Psyr_0974 at 1106.919 kb on + strand, within Psyr_0974 at 1106.919 kb on + strand, within Psyr_0974 at 1106.920 kb on - strand, within Psyr_0974 at 1106.920 kb on - strand, within Psyr_0974 at 1106.922 kb on + strand, within Psyr_0974 at 1106.991 kb on + strand, within Psyr_0974 at 1106.992 kb on - strand, within Psyr_0974 at 1107.272 kb on + strand at 1107.273 kb on - strand at 1107.273 kb on - strand at 1107.273 kb on - strand at 1107.273 kb on - strand at 1107.273 kb on - strand at 1107.293 kb on + strand at 1107.293 kb on + strand at 1107.294 kb on - strand at 1107.294 kb on - strand at 1107.294 kb on - strand at 1107.319 kb on + strand at 1107.319 kb on + strand at 1107.319 kb on + strand at 1107.319 kb on + strand at 1107.319 kb on + strand at 1107.320 kb on - strand at 1107.325 kb on - strand at 1107.326 kb on + strand at 1107.326 kb on + strand at 1107.326 kb on + strand at 1107.327 kb on - strand at 1107.327 kb on - strand at 1107.327 kb on - strand at 1107.360 kb on - strand at 1107.360 kb on - strand at 1107.363 kb on + strand at 1107.363 kb on + strand at 1107.363 kb on + strand at 1107.364 kb on - strand at 1107.364 kb on - strand at 1107.365 kb on + strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.366 kb on - strand at 1107.378 kb on + strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.379 kb on - strand at 1107.391 kb on - strand at 1107.391 kb on - strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.398 kb on + strand at 1107.399 kb on - strand at 1107.399 kb on - strand at 1107.399 kb on - strand at 1107.399 kb on - strand at 1107.399 kb on - strand at 1107.510 kb on - strand, within Psyr_0975 at 1107.520 kb on + strand, within Psyr_0975 at 1107.520 kb on + strand, within Psyr_0975 at 1107.520 kb on + strand, within Psyr_0975 at 1107.521 kb on - strand, within Psyr_0975 at 1107.521 kb on - strand, within Psyr_0975 at 1107.521 kb on - strand, within Psyr_0975 at 1107.521 kb on - strand, within Psyr_0975 at 1107.552 kb on + strand, within Psyr_0975 at 1107.552 kb on + strand, within Psyr_0975 at 1107.553 kb on - strand, within Psyr_0975 at 1107.559 kb on + strand, within Psyr_0975 at 1107.560 kb on - strand, within Psyr_0975 at 1107.560 kb on - strand, within Psyr_0975 at 1107.560 kb on - strand, within Psyr_0975 at 1107.727 kb on + strand, within Psyr_0975 at 1107.727 kb on + strand, within Psyr_0975 at 1107.728 kb on - strand, within Psyr_0975 at 1107.728 kb on - strand, within Psyr_0975 at 1107.728 kb on - strand, within Psyr_0975 at 1107.728 kb on - strand, within Psyr_0975 at 1107.728 kb on - strand, within Psyr_0975 at 1107.745 kb on - strand, within Psyr_0975 at 1107.784 kb on + strand, within Psyr_0975 at 1107.785 kb on - strand, within Psyr_0975 at 1108.084 kb on + strand, within Psyr_0975 at 1108.256 kb on + strand at 1108.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 7.75 ug/ml remove 1,105,503 - -0.4 1,105,504 + -0.4 1,105,504 + +1.3 1,105,504 + -0.3 1,105,505 - +0.5 1,105,505 - +1.5 1,105,569 + -0.3 1,105,569 + -0.6 1,105,569 + -0.4 1,105,569 + +0.0 1,105,569 + -0.3 1,105,569 + +0.0 1,105,570 - -0.1 1,105,570 - -1.6 1,105,570 - -0.4 1,105,570 - +0.1 1,105,570 - +0.8 1,105,570 - -0.0 1,105,570 - -0.2 1,105,572 - -2.3 1,105,624 + +0.0 1,105,691 - -0.2 1,105,723 + Psyr_0973 0.14 +0.9 1,105,723 + Psyr_0973 0.14 +0.7 1,105,723 + Psyr_0973 0.14 +0.6 1,105,723 + Psyr_0973 0.14 +1.6 1,105,723 + Psyr_0973 0.14 +0.0 1,105,724 - Psyr_0973 0.14 -0.6 1,105,730 - Psyr_0973 0.14 +0.3 1,105,972 + Psyr_0973 0.43 +0.4 1,105,972 + Psyr_0973 0.43 +2.1 1,105,982 - Psyr_0973 0.44 -1.3 1,106,053 + Psyr_0973 0.53 +0.8 1,106,054 - Psyr_0973 0.53 +0.6 1,106,054 - Psyr_0973 0.53 +0.3 1,106,054 - Psyr_0973 0.53 +0.0 1,106,054 - Psyr_0973 0.53 -1.1 1,106,104 + Psyr_0973 0.59 +0.1 1,106,105 - Psyr_0973 0.59 -0.1 1,106,105 - Psyr_0973 0.59 +0.0 1,106,357 - Psyr_0973 0.89 -1.2 1,106,357 - Psyr_0973 0.89 -0.9 1,106,589 + Psyr_0974 0.17 -0.5 1,106,590 - Psyr_0974 0.17 -0.2 1,106,727 + Psyr_0974 0.34 +0.8 1,106,728 - Psyr_0974 0.34 +0.8 1,106,741 + Psyr_0974 0.36 +0.5 1,106,741 + Psyr_0974 0.36 +0.2 1,106,741 + Psyr_0974 0.36 +0.8 1,106,741 + Psyr_0974 0.36 -0.2 1,106,741 + Psyr_0974 0.36 +0.8 1,106,742 - Psyr_0974 0.36 -0.2 1,106,757 + Psyr_0974 0.38 -0.0 1,106,875 + Psyr_0974 0.52 +1.6 1,106,876 - Psyr_0974 0.52 +0.8 1,106,919 + Psyr_0974 0.57 +0.1 1,106,919 + Psyr_0974 0.57 -0.5 1,106,919 + Psyr_0974 0.57 +0.5 1,106,919 + Psyr_0974 0.57 -0.7 1,106,920 - Psyr_0974 0.58 -0.4 1,106,920 - Psyr_0974 0.58 -0.7 1,106,922 + Psyr_0974 0.58 +0.4 1,106,991 + Psyr_0974 0.66 -0.1 1,106,992 - Psyr_0974 0.66 -0.7 1,107,272 + +0.5 1,107,273 - +0.6 1,107,273 - -0.5 1,107,273 - +0.8 1,107,273 - -0.9 1,107,273 - -0.9 1,107,293 + +0.3 1,107,293 + +0.1 1,107,294 - -0.6 1,107,294 - -2.4 1,107,294 - -1.0 1,107,319 + +1.3 1,107,319 + +0.6 1,107,319 + +0.5 1,107,319 + +0.3 1,107,319 + +0.5 1,107,320 - -0.7 1,107,325 - -0.3 1,107,326 + -1.0 1,107,326 + +0.4 1,107,326 + +0.8 1,107,327 - -0.6 1,107,327 - -0.1 1,107,327 - +0.3 1,107,360 - -1.6 1,107,360 - +0.8 1,107,363 + +0.5 1,107,363 + +0.5 1,107,363 + +1.0 1,107,364 - -0.1 1,107,364 - -0.5 1,107,365 + -1.9 1,107,366 - -1.2 1,107,366 - -0.1 1,107,366 - +0.5 1,107,366 - -0.4 1,107,378 + +1.1 1,107,379 - -1.0 1,107,379 - -0.4 1,107,379 - +0.3 1,107,379 - -0.6 1,107,379 - +0.9 1,107,379 - -0.9 1,107,379 - +0.2 1,107,379 - +1.0 1,107,391 - -1.2 1,107,391 - -0.1 1,107,398 + +1.3 1,107,398 + -0.6 1,107,398 + -1.2 1,107,398 + -1.3 1,107,398 + +0.2 1,107,398 + +1.0 1,107,398 + -1.4 1,107,399 - -0.5 1,107,399 - -0.4 1,107,399 - +0.0 1,107,399 - -0.5 1,107,399 - +1.4 1,107,510 - Psyr_0975 0.18 -0.7 1,107,520 + Psyr_0975 0.19 -1.2 1,107,520 + Psyr_0975 0.19 +0.6 1,107,520 + Psyr_0975 0.19 +0.0 1,107,521 - Psyr_0975 0.19 -0.2 1,107,521 - Psyr_0975 0.19 -0.2 1,107,521 - Psyr_0975 0.19 +1.1 1,107,521 - Psyr_0975 0.19 +0.4 1,107,552 + Psyr_0975 0.22 -0.0 1,107,552 + Psyr_0975 0.22 +0.4 1,107,553 - Psyr_0975 0.23 -0.9 1,107,559 + Psyr_0975 0.23 -1.3 1,107,560 - Psyr_0975 0.23 -1.9 1,107,560 - Psyr_0975 0.23 -0.2 1,107,560 - Psyr_0975 0.23 -1.3 1,107,727 + Psyr_0975 0.41 -0.3 1,107,727 + Psyr_0975 0.41 +0.6 1,107,728 - Psyr_0975 0.41 -1.3 1,107,728 - Psyr_0975 0.41 +0.3 1,107,728 - Psyr_0975 0.41 -1.8 1,107,728 - Psyr_0975 0.41 -1.0 1,107,728 - Psyr_0975 0.41 -0.5 1,107,745 - Psyr_0975 0.43 +0.0 1,107,784 + Psyr_0975 0.47 -0.0 1,107,785 - Psyr_0975 0.47 -0.4 1,108,084 + Psyr_0975 0.79 -0.7 1,108,256 + +0.6 1,108,256 + -0.3
Or see this region's nucleotide sequence