Strain Fitness in Pseudomonas simiae WCS417 around PS417_04135

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04130 and PS417_04135 are separated by 145 nucleotidesPS417_04135 and PS417_04140 are separated by 112 nucleotides PS417_04130: PS417_04130 - AraC family transcriptional regulator, at 928,626 to 929,621 _04130 PS417_04135: PS417_04135 - acyl-CoA dehydrogenase, at 929,767 to 930,903 _04135 PS417_04140: PS417_04140 - aldo/keto reductase, at 931,016 to 932,056 _04140 Position (kb) 929 930 931Strain fitness (log2 ratio) -2 -1 0 1 2 3at 928.805 kb on - strand, within PS417_04130at 928.959 kb on + strand, within PS417_04130at 928.960 kb on - strand, within PS417_04130at 928.960 kb on - strand, within PS417_04130at 928.996 kb on + strand, within PS417_04130at 929.075 kb on - strand, within PS417_04130at 929.078 kb on + strand, within PS417_04130at 929.078 kb on + strand, within PS417_04130at 929.078 kb on + strand, within PS417_04130at 929.079 kb on - strand, within PS417_04130at 929.079 kb on - strand, within PS417_04130at 929.079 kb on - strand, within PS417_04130at 929.080 kb on + strand, within PS417_04130at 929.080 kb on + strand, within PS417_04130at 929.080 kb on + strand, within PS417_04130at 929.081 kb on - strand, within PS417_04130at 929.117 kb on - strand, within PS417_04130at 929.161 kb on - strand, within PS417_04130at 929.161 kb on - strand, within PS417_04130at 929.203 kb on + strand, within PS417_04130at 929.204 kb on - strand, within PS417_04130at 929.304 kb on + strand, within PS417_04130at 929.304 kb on + strand, within PS417_04130at 929.305 kb on - strand, within PS417_04130at 929.305 kb on - strand, within PS417_04130at 929.615 kb on + strandat 929.622 kb on - strandat 929.622 kb on - strandat 929.631 kb on + strandat 929.638 kb on - strandat 929.720 kb on + strandat 929.720 kb on + strandat 929.721 kb on - strandat 929.721 kb on - strandat 929.721 kb on - strandat 929.878 kb on + strandat 929.878 kb on + strandat 929.879 kb on - strandat 930.058 kb on + strand, within PS417_04135at 930.059 kb on - strand, within PS417_04135at 930.097 kb on + strand, within PS417_04135at 930.097 kb on + strand, within PS417_04135at 930.098 kb on - strand, within PS417_04135at 930.098 kb on - strand, within PS417_04135at 930.211 kb on + strand, within PS417_04135at 930.211 kb on + strand, within PS417_04135at 930.211 kb on + strand, within PS417_04135at 930.212 kb on - strand, within PS417_04135at 930.241 kb on - strand, within PS417_04135at 930.250 kb on + strand, within PS417_04135at 930.470 kb on - strand, within PS417_04135at 930.559 kb on + strand, within PS417_04135at 930.559 kb on + strand, within PS417_04135at 930.559 kb on + strand, within PS417_04135at 930.560 kb on - strand, within PS417_04135at 930.560 kb on - strand, within PS417_04135at 930.730 kb on + strand, within PS417_04135at 930.730 kb on + strand, within PS417_04135at 930.798 kb on + strandat 930.809 kb on - strandat 930.853 kb on + strandat 930.853 kb on + strandat 930.965 kb on + strandat 930.966 kb on - strandat 931.264 kb on - strand, within PS417_04140at 931.282 kb on - strand, within PS417_04140at 931.282 kb on - strand, within PS417_04140at 931.323 kb on + strand, within PS417_04140at 931.323 kb on + strand, within PS417_04140at 931.323 kb on + strand, within PS417_04140at 931.324 kb on - strand, within PS417_04140at 931.324 kb on - strand, within PS417_04140at 931.324 kb on - strand, within PS417_04140at 931.324 kb on - strand, within PS417_04140at 931.417 kb on + strand, within PS417_04140at 931.418 kb on - strand, within PS417_04140at 931.620 kb on + strand, within PS417_04140at 931.671 kb on + strand, within PS417_04140at 931.766 kb on - strand, within PS417_04140at 931.768 kb on - strand, within PS417_04140at 931.768 kb on - strand, within PS417_04140at 931.855 kb on - strand, within PS417_04140at 931.855 kb on - strand, within PS417_04140at 931.872 kb on + strandat 931.872 kb on + strand, within PS417_04140at 931.872 kb on + strand, within PS417_04140at 931.872 kb on + strand, within PS417_04140at 931.872 kb on + strand, within PS417_04140at 931.872 kb on + strand, within PS417_04140at 931.873 kb on - strand, within PS417_04140at 931.873 kb on - strand, within PS417_04140

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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928,805 - PS417_04130 0.18 +1.7
928,959 + PS417_04130 0.33 +1.9
928,960 - PS417_04130 0.34 +0.8
928,960 - PS417_04130 0.34 +0.1
928,996 + PS417_04130 0.37 -1.9
929,075 - PS417_04130 0.45 -1.2
929,078 + PS417_04130 0.45 -0.9
929,078 + PS417_04130 0.45 +1.4
929,078 + PS417_04130 0.45 -1.8
929,079 - PS417_04130 0.45 +1.7
929,079 - PS417_04130 0.45 -1.6
929,079 - PS417_04130 0.45 -0.2
929,080 + PS417_04130 0.46 +0.3
929,080 + PS417_04130 0.46 +0.7
929,080 + PS417_04130 0.46 +0.6
929,081 - PS417_04130 0.46 +0.4
929,117 - PS417_04130 0.49 -0.5
929,161 - PS417_04130 0.54 -0.2
929,161 - PS417_04130 0.54 -2.3
929,203 + PS417_04130 0.58 -1.2
929,204 - PS417_04130 0.58 +2.8
929,304 + PS417_04130 0.68 +0.4
929,304 + PS417_04130 0.68 -0.1
929,305 - PS417_04130 0.68 +0.6
929,305 - PS417_04130 0.68 -0.9
929,615 + +0.3
929,622 - +1.9
929,622 - +1.2
929,631 + -1.2
929,638 - -0.6
929,720 + +1.1
929,720 + +1.3
929,721 - -0.7
929,721 - -2.0
929,721 - -1.3
929,878 + +0.1
929,878 + +0.4
929,879 - -0.5
930,058 + PS417_04135 0.26 +0.4
930,059 - PS417_04135 0.26 -1.2
930,097 + PS417_04135 0.29 +0.5
930,097 + PS417_04135 0.29 -1.5
930,098 - PS417_04135 0.29 -0.6
930,098 - PS417_04135 0.29 +0.1
930,211 + PS417_04135 0.39 -0.9
930,211 + PS417_04135 0.39 -2.2
930,211 + PS417_04135 0.39 +2.1
930,212 - PS417_04135 0.39 +1.5
930,241 - PS417_04135 0.42 -1.1
930,250 + PS417_04135 0.42 -0.9
930,470 - PS417_04135 0.62 +0.5
930,559 + PS417_04135 0.70 -0.4
930,559 + PS417_04135 0.70 -1.5
930,559 + PS417_04135 0.70 -2.4
930,560 - PS417_04135 0.70 +1.0
930,560 - PS417_04135 0.70 -1.2
930,730 + PS417_04135 0.85 +2.1
930,730 + PS417_04135 0.85 -0.2
930,798 + +1.0
930,809 - -1.6
930,853 + -0.0
930,853 + +0.5
930,965 + +0.3
930,966 - +0.9
931,264 - PS417_04140 0.24 +0.9
931,282 - PS417_04140 0.26 +0.9
931,282 - PS417_04140 0.26 -0.2
931,323 + PS417_04140 0.29 -0.2
931,323 + PS417_04140 0.29 -1.5
931,323 + PS417_04140 0.29 +0.2
931,324 - PS417_04140 0.30 +1.5
931,324 - PS417_04140 0.30 -1.8
931,324 - PS417_04140 0.30 -0.1
931,324 - PS417_04140 0.30 +0.1
931,417 + PS417_04140 0.39 +2.1
931,418 - PS417_04140 0.39 +1.5
931,620 + PS417_04140 0.58 -2.6
931,671 + PS417_04140 0.63 +0.2
931,766 - PS417_04140 0.72 +0.7
931,768 - PS417_04140 0.72 -0.1
931,768 - PS417_04140 0.72 -1.0
931,855 - PS417_04140 0.81 +1.9
931,855 - PS417_04140 0.81 -0.0
931,872 + +3.1
931,872 + PS417_04140 0.82 -0.8
931,872 + PS417_04140 0.82 -0.2
931,872 + PS417_04140 0.82 -1.3
931,872 + PS417_04140 0.82 -2.2
931,872 + PS417_04140 0.82 +1.3
931,873 - PS417_04140 0.82 -0.4
931,873 - PS417_04140 0.82 -0.5

Or see this region's nucleotide sequence