Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04070 and PS417_04075 are separated by 170 nucleotides PS417_04075 and PS417_04080 are separated by 304 nucleotides
PS417_04070: PS417_04070 - porin, at 912,876 to 914,291
_04070
PS417_04075: PS417_04075 - peptide ABC transporter substrate-binding protein, at 914,462 to 916,066
_04075
PS417_04080: PS417_04080 - peptide ABC transporter substrate-binding protein, at 916,371 to 917,999
_04080
Position (kb) 914
915
916
917 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 913.484 kb on - strand, within PS417_04070 at 913.861 kb on + strand, within PS417_04070 at 913.861 kb on + strand, within PS417_04070 at 913.928 kb on - strand, within PS417_04070 at 913.928 kb on - strand, within PS417_04070 at 913.928 kb on - strand, within PS417_04070 at 913.931 kb on + strand, within PS417_04070 at 913.933 kb on + strand, within PS417_04070 at 914.071 kb on + strand, within PS417_04070 at 914.121 kb on - strand, within PS417_04070 at 914.153 kb on + strand at 914.318 kb on + strand at 914.474 kb on - strand at 914.613 kb on + strand at 914.673 kb on + strand, within PS417_04075 at 914.697 kb on + strand, within PS417_04075 at 914.727 kb on + strand, within PS417_04075 at 914.728 kb on - strand at 914.821 kb on - strand, within PS417_04075 at 914.821 kb on - strand, within PS417_04075 at 914.835 kb on + strand, within PS417_04075 at 914.916 kb on + strand, within PS417_04075 at 915.180 kb on + strand, within PS417_04075 at 915.190 kb on - strand, within PS417_04075 at 915.190 kb on - strand, within PS417_04075 at 915.190 kb on - strand, within PS417_04075 at 915.397 kb on - strand, within PS417_04075 at 915.397 kb on - strand, within PS417_04075 at 915.802 kb on - strand, within PS417_04075 at 915.892 kb on - strand, within PS417_04075 at 915.931 kb on - strand at 915.931 kb on - strand at 916.057 kb on + strand at 916.088 kb on + strand at 916.089 kb on - strand at 916.089 kb on - strand at 916.218 kb on + strand at 916.246 kb on - strand at 916.246 kb on - strand at 916.281 kb on - strand at 916.314 kb on + strand at 916.347 kb on - strand at 916.372 kb on + strand at 916.372 kb on + strand at 916.373 kb on - strand at 916.396 kb on + strand at 916.397 kb on - strand at 916.459 kb on + strand at 916.509 kb on - strand at 916.524 kb on - strand at 916.524 kb on - strand at 916.526 kb on - strand at 916.748 kb on - strand, within PS417_04080
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 913,484 - PS417_04070 0.43 +0.1 913,861 + PS417_04070 0.70 +0.6 913,861 + PS417_04070 0.70 -2.0 913,928 - PS417_04070 0.74 +0.3 913,928 - PS417_04070 0.74 -0.9 913,928 - PS417_04070 0.74 -0.0 913,931 + PS417_04070 0.75 +0.2 913,933 + PS417_04070 0.75 -0.9 914,071 + PS417_04070 0.84 +1.0 914,121 - PS417_04070 0.88 -3.2 914,153 + +3.4 914,318 + -0.2 914,474 - +0.9 914,613 + -0.5 914,673 + PS417_04075 0.13 -0.2 914,697 + PS417_04075 0.15 -0.7 914,727 + PS417_04075 0.17 -1.6 914,728 - -0.5 914,821 - PS417_04075 0.22 -0.4 914,821 - PS417_04075 0.22 -0.0 914,835 + PS417_04075 0.23 -0.4 914,916 + PS417_04075 0.28 +0.1 915,180 + PS417_04075 0.45 +0.3 915,190 - PS417_04075 0.45 -0.6 915,190 - PS417_04075 0.45 -1.6 915,190 - PS417_04075 0.45 -0.4 915,397 - PS417_04075 0.58 +1.0 915,397 - PS417_04075 0.58 +0.2 915,802 - PS417_04075 0.83 +0.2 915,892 - PS417_04075 0.89 -1.2 915,931 - +0.0 915,931 - -1.6 916,057 + -1.4 916,088 + -0.6 916,089 - +1.4 916,089 - +1.4 916,218 + -1.0 916,246 - +0.4 916,246 - +8.0 916,281 - +0.9 916,314 + +0.5 916,347 - -0.5 916,372 + +1.8 916,372 + +0.7 916,373 - +1.8 916,396 + +1.4 916,397 - -0.6 916,459 + +0.1 916,509 - -0.9 916,524 - +0.2 916,524 - +1.8 916,526 - -1.4 916,748 - PS417_04080 0.23 -0.5
Or see this region's nucleotide sequence