Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03060 and PS417_03065 are separated by 72 nucleotides PS417_03065 and PS417_03070 are separated by 125 nucleotides PS417_03070 and PS417_03075 overlap by 4 nucleotides PS417_03075 and PS417_03080 are separated by 10 nucleotides
PS417_03060: PS417_03060 - pilus assembly protein TadE, at 705,445 to 705,888
_03060
PS417_03065: PS417_03065 - peptidase A24, at 705,961 to 706,410
_03065
PS417_03070: PS417_03070 - LuxR family transcriptional regulator, at 706,536 to 707,324
_03070
PS417_03075: PS417_03075 - hypothetical protein, at 707,321 to 707,593
_03075
PS417_03080: PS417_03080 - hypothetical protein, at 707,604 to 708,314
_03080
Position (kb) 706
707
708 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 705.536 kb on + strand, within PS417_03060 at 705.537 kb on - strand, within PS417_03060 at 705.587 kb on + strand, within PS417_03060 at 705.588 kb on - strand, within PS417_03060 at 705.597 kb on + strand, within PS417_03060 at 705.597 kb on + strand, within PS417_03060 at 705.598 kb on - strand, within PS417_03060 at 705.598 kb on - strand, within PS417_03060 at 705.690 kb on - strand, within PS417_03060 at 705.788 kb on + strand, within PS417_03060 at 705.788 kb on + strand, within PS417_03060 at 705.789 kb on - strand, within PS417_03060 at 705.803 kb on + strand, within PS417_03060 at 705.913 kb on + strand at 705.914 kb on - strand at 705.914 kb on - strand at 705.914 kb on - strand at 705.928 kb on + strand at 705.928 kb on + strand at 705.929 kb on - strand at 706.015 kb on - strand, within PS417_03065 at 706.075 kb on + strand, within PS417_03065 at 706.075 kb on + strand, within PS417_03065 at 706.076 kb on - strand, within PS417_03065 at 706.076 kb on - strand, within PS417_03065 at 706.169 kb on - strand, within PS417_03065 at 706.230 kb on + strand, within PS417_03065 at 706.230 kb on + strand, within PS417_03065 at 706.370 kb on + strand at 706.371 kb on - strand at 706.391 kb on - strand at 706.426 kb on - strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.436 kb on - strand at 706.451 kb on - strand at 706.457 kb on - strand at 706.463 kb on - strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.478 kb on - strand at 706.547 kb on + strand at 706.548 kb on - strand at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.719 kb on - strand, within PS417_03070 at 706.861 kb on - strand, within PS417_03070 at 706.864 kb on - strand, within PS417_03070 at 706.978 kb on - strand, within PS417_03070 at 707.005 kb on - strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.137 kb on + strand, within PS417_03070 at 707.170 kb on - strand, within PS417_03070 at 707.215 kb on + strand, within PS417_03070 at 707.217 kb on + strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.323 kb on - strand at 707.323 kb on - strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.329 kb on + strand at 707.329 kb on + strand at 707.330 kb on - strand at 707.394 kb on + strand, within PS417_03075 at 707.394 kb on + strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.580 kb on + strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.605 kb on + strand at 707.767 kb on + strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 705,536 + PS417_03060 0.20 -1.0 705,537 - PS417_03060 0.21 +1.9 705,587 + PS417_03060 0.32 +0.6 705,588 - PS417_03060 0.32 -0.0 705,597 + PS417_03060 0.34 +0.6 705,597 + PS417_03060 0.34 +0.3 705,598 - PS417_03060 0.34 -1.8 705,598 - PS417_03060 0.34 +0.7 705,690 - PS417_03060 0.55 +2.7 705,788 + PS417_03060 0.77 +0.3 705,788 + PS417_03060 0.77 +0.2 705,789 - PS417_03060 0.77 +0.8 705,803 + PS417_03060 0.81 +2.2 705,913 + +0.2 705,914 - -1.0 705,914 - +0.4 705,914 - -0.1 705,928 + +0.3 705,928 + -0.3 705,929 - +0.6 706,015 - PS417_03065 0.12 +0.0 706,075 + PS417_03065 0.25 -0.2 706,075 + PS417_03065 0.25 -1.8 706,076 - PS417_03065 0.26 +0.6 706,076 - PS417_03065 0.26 +0.6 706,169 - PS417_03065 0.46 +1.3 706,230 + PS417_03065 0.60 +0.4 706,230 + PS417_03065 0.60 -0.6 706,370 + +0.2 706,371 - -0.2 706,391 - +1.1 706,426 - -0.6 706,431 + +0.5 706,431 + +1.1 706,431 + +0.8 706,432 - -0.1 706,432 - -0.4 706,432 - +0.0 706,435 + -1.3 706,435 + +0.6 706,435 + -1.5 706,435 + -0.2 706,435 + -0.2 706,436 - -1.7 706,451 - +1.0 706,457 - -0.2 706,463 - +0.3 706,469 + +0.2 706,469 + +0.5 706,469 + +2.9 706,469 + -1.4 706,470 - +0.1 706,470 - +0.5 706,470 - +0.8 706,473 + +1.0 706,473 + +1.0 706,473 + +0.9 706,473 + -0.2 706,473 + -0.5 706,473 + +2.4 706,474 - -1.3 706,474 - +0.9 706,474 - +2.9 706,474 - -0.1 706,474 - -0.7 706,477 + +0.1 706,477 + -0.1 706,477 + -2.4 706,477 + -0.5 706,478 - -1.3 706,547 + -1.0 706,548 - +0.3 706,718 + PS417_03070 0.23 +0.5 706,718 + PS417_03070 0.23 -0.2 706,718 + PS417_03070 0.23 +1.2 706,719 - PS417_03070 0.23 +1.1 706,861 - PS417_03070 0.41 -1.6 706,864 - PS417_03070 0.42 +0.9 706,978 - PS417_03070 0.56 +0.6 707,005 - PS417_03070 0.59 -0.4 707,102 + PS417_03070 0.72 +0.5 707,102 + PS417_03070 0.72 +9.2 707,137 + PS417_03070 0.76 +0.7 707,170 - PS417_03070 0.80 -0.8 707,215 + PS417_03070 0.86 -0.2 707,217 + PS417_03070 0.86 -1.6 707,218 - PS417_03070 0.86 -0.5 707,218 - PS417_03070 0.86 +0.8 707,218 - PS417_03070 0.86 +0.7 707,246 + -1.8 707,246 + -1.2 707,246 + -1.0 707,246 + +0.5 707,323 - -1.4 707,323 - -0.5 707,326 + -0.2 707,326 + +0.2 707,326 + +1.8 707,327 - -1.1 707,327 - -0.6 707,327 - +0.2 707,329 + -0.9 707,329 + +2.5 707,330 - -0.2 707,394 + PS417_03075 0.27 -0.8 707,394 + PS417_03075 0.27 +0.6 707,395 - PS417_03075 0.27 -0.5 707,395 - PS417_03075 0.27 +0.7 707,580 + -1.7 707,581 - -0.9 707,581 - -1.1 707,581 - +0.4 707,605 + +1.1 707,767 + PS417_03080 0.23 +0.5 708,038 - PS417_03080 0.61 -1.9 708,038 - PS417_03080 0.61 +0.9
Or see this region's nucleotide sequence