Strain Fitness in Pseudomonas simiae WCS417 around PS417_28415

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28405 and PS417_28410 are separated by 9 nucleotidesPS417_28410 and PS417_28415 are separated by 1 nucleotidesPS417_28415 and PS417_28420 are separated by 22 nucleotidesPS417_28420 and PS417_28425 are separated by 150 nucleotides PS417_28405: PS417_28405 - hypothetical protein, at 6,132,434 to 6,132,877 _28405 PS417_28410: PS417_28410 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 6,132,887 to 6,133,507 _28410 PS417_28415: PS417_28415 - phosphatidate cytidylyltransferase, at 6,133,509 to 6,134,441 _28415 PS417_28420: PS417_28420 - AsnC family transcriptional regulator, at 6,134,464 to 6,134,937 _28420 PS417_28425: PS417_28425 - lysine transporter LysE, at 6,135,088 to 6,135,717 _28425 Position (kb) 6133 6134 6135Strain fitness (log2 ratio) -2 -1 0 1at 6132.531 kb on + strand, within PS417_28405at 6132.531 kb on + strand, within PS417_28405at 6132.531 kb on + strand, within PS417_28405at 6132.532 kb on - strand, within PS417_28405at 6132.624 kb on - strand, within PS417_28405at 6132.886 kb on + strandat 6132.887 kb on - strandat 6132.992 kb on + strand, within PS417_28410at 6132.993 kb on - strand, within PS417_28410at 6132.993 kb on - strand, within PS417_28410at 6133.091 kb on + strand, within PS417_28410at 6133.118 kb on + strand, within PS417_28410at 6133.118 kb on + strand, within PS417_28410at 6133.119 kb on - strand, within PS417_28410at 6133.351 kb on - strand, within PS417_28410at 6133.378 kb on - strand, within PS417_28410at 6133.591 kb on + strandat 6133.591 kb on + strandat 6133.592 kb on - strandat 6133.592 kb on - strandat 6133.666 kb on + strand, within PS417_28415at 6133.734 kb on + strand, within PS417_28415at 6133.734 kb on + strand, within PS417_28415at 6133.734 kb on + strand, within PS417_28415at 6133.735 kb on - strand, within PS417_28415at 6133.827 kb on + strand, within PS417_28415at 6133.827 kb on + strand, within PS417_28415at 6133.828 kb on - strand, within PS417_28415at 6133.828 kb on - strand, within PS417_28415at 6133.839 kb on + strand, within PS417_28415at 6133.881 kb on + strand, within PS417_28415at 6133.882 kb on - strand, within PS417_28415at 6133.882 kb on - strand, within PS417_28415at 6134.062 kb on - strand, within PS417_28415at 6134.092 kb on + strand, within PS417_28415at 6134.092 kb on + strand, within PS417_28415at 6134.092 kb on + strand, within PS417_28415at 6134.093 kb on - strand, within PS417_28415at 6134.100 kb on + strand, within PS417_28415at 6134.100 kb on + strand, within PS417_28415at 6134.101 kb on - strand, within PS417_28415at 6134.101 kb on - strand, within PS417_28415at 6134.226 kb on - strand, within PS417_28415at 6134.345 kb on + strand, within PS417_28415at 6134.346 kb on - strand, within PS417_28415at 6134.448 kb on + strandat 6135.085 kb on + strandat 6135.085 kb on + strandat 6135.130 kb on + strandat 6135.342 kb on + strand, within PS417_28425at 6135.363 kb on + strand, within PS417_28425at 6135.363 kb on + strand, within PS417_28425at 6135.364 kb on - strand, within PS417_28425

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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6,132,531 + PS417_28405 0.22 +1.3
6,132,531 + PS417_28405 0.22 +0.7
6,132,531 + PS417_28405 0.22 +1.6
6,132,532 - PS417_28405 0.22 +1.3
6,132,624 - PS417_28405 0.43 -1.6
6,132,886 + -1.1
6,132,887 - -1.1
6,132,992 + PS417_28410 0.17 -0.9
6,132,993 - PS417_28410 0.17 +0.2
6,132,993 - PS417_28410 0.17 -0.6
6,133,091 + PS417_28410 0.33 +0.4
6,133,118 + PS417_28410 0.37 -1.4
6,133,118 + PS417_28410 0.37 -1.3
6,133,119 - PS417_28410 0.37 -1.4
6,133,351 - PS417_28410 0.75 +1.7
6,133,378 - PS417_28410 0.79 -0.4
6,133,591 + -0.9
6,133,591 + -0.3
6,133,592 - -0.4
6,133,592 - +0.8
6,133,666 + PS417_28415 0.17 -1.8
6,133,734 + PS417_28415 0.24 +0.6
6,133,734 + PS417_28415 0.24 -2.3
6,133,734 + PS417_28415 0.24 -0.3
6,133,735 - PS417_28415 0.24 -1.0
6,133,827 + PS417_28415 0.34 -0.0
6,133,827 + PS417_28415 0.34 -1.1
6,133,828 - PS417_28415 0.34 -0.0
6,133,828 - PS417_28415 0.34 -1.0
6,133,839 + PS417_28415 0.35 -0.2
6,133,881 + PS417_28415 0.40 +0.4
6,133,882 - PS417_28415 0.40 -1.0
6,133,882 - PS417_28415 0.40 -0.3
6,134,062 - PS417_28415 0.59 -1.3
6,134,092 + PS417_28415 0.62 +0.0
6,134,092 + PS417_28415 0.62 -0.4
6,134,092 + PS417_28415 0.62 -1.1
6,134,093 - PS417_28415 0.63 -2.3
6,134,100 + PS417_28415 0.63 +0.8
6,134,100 + PS417_28415 0.63 +0.3
6,134,101 - PS417_28415 0.63 -0.0
6,134,101 - PS417_28415 0.63 +0.1
6,134,226 - PS417_28415 0.77 -1.0
6,134,345 + PS417_28415 0.90 -0.2
6,134,346 - PS417_28415 0.90 +0.8
6,134,448 + +0.5
6,135,085 + +0.8
6,135,085 + +1.3
6,135,130 + -0.4
6,135,342 + PS417_28425 0.40 -0.6
6,135,363 + PS417_28425 0.44 -0.1
6,135,363 + PS417_28425 0.44 -1.1
6,135,364 - PS417_28425 0.44 -1.2

Or see this region's nucleotide sequence