Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26910 and PS417_26915 overlap by 8 nucleotides PS417_26915 and PS417_26920 are separated by 5 nucleotides PS417_26920 and PS417_26925 are separated by 91 nucleotides
PS417_26910: PS417_26910 - membrane protein, at 5,811,333 to 5,812,703
_26910
PS417_26915: PS417_26915 - GTPase SAR1, at 5,812,696 to 5,814,063
_26915
PS417_26920: PS417_26920 - hypothetical protein, at 5,814,069 to 5,814,608
_26920
PS417_26925: PS417_26925 - phosphohydrolase, at 5,814,700 to 5,815,254
_26925
Position (kb) 5812
5813
5814
5815 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5811.740 kb on - strand, within PS417_26910 at 5811.805 kb on + strand, within PS417_26910 at 5811.805 kb on + strand, within PS417_26910 at 5811.899 kb on + strand, within PS417_26910 at 5811.899 kb on + strand, within PS417_26910 at 5811.900 kb on - strand, within PS417_26910 at 5811.960 kb on - strand, within PS417_26910 at 5812.119 kb on + strand, within PS417_26910 at 5812.120 kb on - strand, within PS417_26910 at 5812.120 kb on - strand, within PS417_26910 at 5812.701 kb on + strand at 5812.702 kb on - strand at 5812.871 kb on - strand, within PS417_26915 at 5813.056 kb on + strand, within PS417_26915 at 5813.272 kb on + strand, within PS417_26915 at 5813.273 kb on - strand, within PS417_26915 at 5813.752 kb on + strand, within PS417_26915 at 5813.753 kb on - strand, within PS417_26915 at 5813.753 kb on - strand, within PS417_26915 at 5813.753 kb on - strand, within PS417_26915 at 5814.077 kb on + strand at 5814.138 kb on - strand, within PS417_26920 at 5814.208 kb on + strand, within PS417_26920 at 5814.209 kb on - strand, within PS417_26920 at 5814.209 kb on - strand, within PS417_26920 at 5814.224 kb on - strand, within PS417_26920 at 5814.317 kb on - strand, within PS417_26920 at 5814.329 kb on + strand, within PS417_26920 at 5814.330 kb on - strand, within PS417_26920 at 5814.330 kb on - strand, within PS417_26920 at 5814.390 kb on - strand, within PS417_26920 at 5814.453 kb on + strand, within PS417_26920 at 5814.454 kb on - strand, within PS417_26920 at 5814.454 kb on - strand, within PS417_26920 at 5814.535 kb on + strand, within PS417_26920 at 5814.569 kb on + strand at 5814.601 kb on + strand at 5814.622 kb on + strand at 5814.644 kb on - strand at 5814.690 kb on + strand at 5814.691 kb on - strand at 5814.691 kb on - strand at 5814.870 kb on - strand, within PS417_26925 at 5814.908 kb on + strand, within PS417_26925 at 5814.908 kb on + strand, within PS417_26925 at 5814.908 kb on + strand, within PS417_26925 at 5814.909 kb on - strand, within PS417_26925 at 5814.909 kb on - strand, within PS417_26925
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 5,811,740 - PS417_26910 0.30 +0.6 5,811,805 + PS417_26910 0.34 +1.1 5,811,805 + PS417_26910 0.34 -0.1 5,811,899 + PS417_26910 0.41 +3.6 5,811,899 + PS417_26910 0.41 +0.1 5,811,900 - PS417_26910 0.41 -0.5 5,811,960 - PS417_26910 0.46 -0.6 5,812,119 + PS417_26910 0.57 -0.6 5,812,120 - PS417_26910 0.57 -0.7 5,812,120 - PS417_26910 0.57 +0.9 5,812,701 + -1.3 5,812,702 - -0.0 5,812,871 - PS417_26915 0.13 +0.6 5,813,056 + PS417_26915 0.26 +1.1 5,813,272 + PS417_26915 0.42 -0.5 5,813,273 - PS417_26915 0.42 +2.3 5,813,752 + PS417_26915 0.77 +0.8 5,813,753 - PS417_26915 0.77 +2.6 5,813,753 - PS417_26915 0.77 +0.1 5,813,753 - PS417_26915 0.77 +0.3 5,814,077 + +0.6 5,814,138 - PS417_26920 0.13 -1.0 5,814,208 + PS417_26920 0.26 -1.0 5,814,209 - PS417_26920 0.26 -0.2 5,814,209 - PS417_26920 0.26 -0.0 5,814,224 - PS417_26920 0.29 -0.7 5,814,317 - PS417_26920 0.46 -0.8 5,814,329 + PS417_26920 0.48 +0.0 5,814,330 - PS417_26920 0.48 +0.2 5,814,330 - PS417_26920 0.48 -1.9 5,814,390 - PS417_26920 0.59 +0.2 5,814,453 + PS417_26920 0.71 +3.3 5,814,454 - PS417_26920 0.71 +0.5 5,814,454 - PS417_26920 0.71 +0.0 5,814,535 + PS417_26920 0.86 -0.5 5,814,569 + +1.2 5,814,601 + -2.3 5,814,622 + -0.8 5,814,644 - -0.4 5,814,690 + -1.2 5,814,691 - +1.9 5,814,691 - +0.4 5,814,870 - PS417_26925 0.31 +0.4 5,814,908 + PS417_26925 0.37 +1.0 5,814,908 + PS417_26925 0.37 -1.2 5,814,908 + PS417_26925 0.37 +1.1 5,814,909 - PS417_26925 0.38 +0.4 5,814,909 - PS417_26925 0.38 +1.0
Or see this region's nucleotide sequence