Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02590 and PS417_02595 are separated by 118 nucleotides PS417_02595 and PS417_02600 overlap by 4 nucleotides PS417_02600 and PS417_02605 are separated by 187 nucleotides
PS417_02590: PS417_02590 - hypothetical protein, at 589,321 to 591,624
_02590
PS417_02595: PS417_02595 - NAD synthetase, at 591,743 to 592,675
_02595
PS417_02600: PS417_02600 - hypothetical protein, at 592,672 to 593,121
_02600
PS417_02605: PS417_02605 - IMP dehydrogenase, at 593,309 to 596,599
_02605
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 590.837 kb on - strand, within PS417_02590 at 590.837 kb on - strand, within PS417_02590 at 590.837 kb on - strand, within PS417_02590 at 590.944 kb on + strand, within PS417_02590 at 590.945 kb on - strand, within PS417_02590 at 590.945 kb on - strand, within PS417_02590 at 590.945 kb on - strand, within PS417_02590 at 590.945 kb on - strand, within PS417_02590 at 590.974 kb on + strand, within PS417_02590 at 590.974 kb on + strand, within PS417_02590 at 590.975 kb on - strand, within PS417_02590 at 591.002 kb on - strand, within PS417_02590 at 591.013 kb on + strand, within PS417_02590 at 591.013 kb on + strand, within PS417_02590 at 591.013 kb on + strand, within PS417_02590 at 591.014 kb on - strand, within PS417_02590 at 591.148 kb on + strand, within PS417_02590 at 591.148 kb on + strand, within PS417_02590 at 591.184 kb on + strand, within PS417_02590 at 591.185 kb on - strand, within PS417_02590 at 591.373 kb on + strand, within PS417_02590 at 591.374 kb on - strand, within PS417_02590 at 591.374 kb on - strand, within PS417_02590 at 591.642 kb on - strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.742 kb on + strand at 591.743 kb on - strand at 591.743 kb on - strand at 591.887 kb on + strand, within PS417_02595 at 591.887 kb on + strand, within PS417_02595 at 591.888 kb on - strand, within PS417_02595 at 591.888 kb on - strand, within PS417_02595 at 591.984 kb on - strand, within PS417_02595 at 592.169 kb on - strand, within PS417_02595 at 592.219 kb on + strand, within PS417_02595 at 592.219 kb on + strand, within PS417_02595 at 592.219 kb on + strand, within PS417_02595 at 592.220 kb on - strand, within PS417_02595 at 592.220 kb on - strand, within PS417_02595 at 592.223 kb on + strand, within PS417_02595 at 592.223 kb on + strand, within PS417_02595 at 592.224 kb on - strand, within PS417_02595 at 592.224 kb on - strand, within PS417_02595 at 592.224 kb on - strand, within PS417_02595 at 592.277 kb on + strand, within PS417_02595 at 592.295 kb on - strand, within PS417_02595 at 592.454 kb on - strand, within PS417_02595 at 592.486 kb on - strand, within PS417_02595 at 592.609 kb on + strand at 592.609 kb on + strand at 592.610 kb on - strand at 592.610 kb on - strand at 592.610 kb on - strand at 592.623 kb on + strand at 592.624 kb on - strand at 592.624 kb on - strand at 592.655 kb on + strand at 592.789 kb on + strand, within PS417_02600 at 592.789 kb on + strand, within PS417_02600 at 592.789 kb on + strand at 592.825 kb on + strand, within PS417_02600 at 592.826 kb on - strand, within PS417_02600 at 592.842 kb on - strand, within PS417_02600 at 592.847 kb on + strand, within PS417_02600 at 592.925 kb on - strand, within PS417_02600 at 593.075 kb on + strand, within PS417_02600 at 593.127 kb on + strand at 593.190 kb on + strand at 593.214 kb on + strand at 593.215 kb on - strand at 593.229 kb on + strand at 593.261 kb on + strand at 593.262 kb on - strand at 593.345 kb on + strand at 593.352 kb on - strand at 593.492 kb on + strand at 593.492 kb on + strand at 593.532 kb on + strand at 593.532 kb on + strand at 593.533 kb on - strand at 593.533 kb on - strand at 593.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 590,837 - PS417_02590 0.66 -0.2 590,837 - PS417_02590 0.66 +1.6 590,837 - PS417_02590 0.66 +0.4 590,944 + PS417_02590 0.70 -1.1 590,945 - PS417_02590 0.70 +0.2 590,945 - PS417_02590 0.70 -1.2 590,945 - PS417_02590 0.70 +1.2 590,945 - PS417_02590 0.70 -0.1 590,974 + PS417_02590 0.72 -2.8 590,974 + PS417_02590 0.72 -1.0 590,975 - PS417_02590 0.72 -1.2 591,002 - PS417_02590 0.73 -0.4 591,013 + PS417_02590 0.73 -1.1 591,013 + PS417_02590 0.73 +0.8 591,013 + PS417_02590 0.73 +0.0 591,014 - PS417_02590 0.73 -1.2 591,148 + PS417_02590 0.79 +1.5 591,148 + PS417_02590 0.79 -0.3 591,184 + PS417_02590 0.81 +0.7 591,185 - PS417_02590 0.81 -0.3 591,373 + PS417_02590 0.89 +0.5 591,374 - PS417_02590 0.89 -0.6 591,374 - PS417_02590 0.89 +0.3 591,642 - -1.8 591,742 + -0.5 591,742 + +0.4 591,742 + -0.8 591,742 + +0.0 591,743 - +0.4 591,743 - +1.4 591,887 + PS417_02595 0.15 +1.2 591,887 + PS417_02595 0.15 -0.5 591,888 - PS417_02595 0.16 -0.1 591,888 - PS417_02595 0.16 +0.1 591,984 - PS417_02595 0.26 -1.0 592,169 - PS417_02595 0.46 +1.1 592,219 + PS417_02595 0.51 +0.7 592,219 + PS417_02595 0.51 +0.5 592,219 + PS417_02595 0.51 +0.8 592,220 - PS417_02595 0.51 -0.1 592,220 - PS417_02595 0.51 +0.2 592,223 + PS417_02595 0.51 +2.6 592,223 + PS417_02595 0.51 +2.9 592,224 - PS417_02595 0.52 -0.9 592,224 - PS417_02595 0.52 +0.1 592,224 - PS417_02595 0.52 +0.6 592,277 + PS417_02595 0.57 -0.3 592,295 - PS417_02595 0.59 -1.0 592,454 - PS417_02595 0.76 -0.7 592,486 - PS417_02595 0.80 -1.1 592,609 + +0.1 592,609 + -0.7 592,610 - -2.2 592,610 - -1.9 592,610 - +0.1 592,623 + +0.4 592,624 - -0.1 592,624 - +1.2 592,655 + -1.0 592,789 + PS417_02600 0.26 -0.2 592,789 + PS417_02600 0.26 +0.1 592,789 + +1.8 592,825 + PS417_02600 0.34 +0.7 592,826 - PS417_02600 0.34 -0.2 592,842 - PS417_02600 0.38 -1.9 592,847 + PS417_02600 0.39 -0.9 592,925 - PS417_02600 0.56 -0.8 593,075 + PS417_02600 0.90 -1.4 593,127 + -0.2 593,190 + +0.8 593,214 + +0.2 593,215 - -0.3 593,229 + -1.1 593,261 + +0.2 593,262 - -1.8 593,345 + +0.1 593,352 - -1.8 593,492 + -0.4 593,492 + -0.2 593,532 + +0.8 593,532 + -0.1 593,533 - -0.4 593,533 - -1.1 593,625 - -0.5
Or see this region's nucleotide sequence