Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25370 and PS417_25375 are separated by 952 nucleotides PS417_25375 and PS417_25380 are separated by 522 nucleotides PS417_25380 and PS417_25385 are separated by 159 nucleotides
PS417_25370: PS417_25370 - hypothetical protein, at 5,492,531 to 5,493,466
_25370
PS417_25375: PS417_25375 - hypothetical protein, at 5,494,419 to 5,496,899
_25375
PS417_25380: PS417_25380 - hypothetical protein, at 5,497,422 to 5,497,613
_25380
PS417_25385: PS417_25385 - single-stranded DNA-binding protein, at 5,497,773 to 5,498,288
_25385
Position (kb) 5494
5495
5496
5497 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 5493.587 kb on - strand at 5493.587 kb on - strand at 5493.610 kb on - strand at 5493.610 kb on - strand at 5493.707 kb on + strand at 5493.812 kb on + strand at 5493.813 kb on - strand at 5493.869 kb on - strand at 5493.885 kb on + strand at 5493.889 kb on + strand at 5493.889 kb on + strand at 5493.890 kb on - strand at 5493.890 kb on - strand at 5493.891 kb on + strand at 5493.933 kb on + strand at 5493.933 kb on + strand at 5493.934 kb on - strand at 5493.942 kb on + strand at 5493.942 kb on + strand at 5493.944 kb on + strand at 5493.944 kb on + strand at 5493.945 kb on - strand at 5493.945 kb on - strand at 5494.116 kb on + strand at 5494.116 kb on + strand at 5494.167 kb on - strand at 5494.170 kb on - strand at 5494.228 kb on + strand at 5494.228 kb on + strand at 5494.311 kb on - strand at 5494.331 kb on - strand at 5494.381 kb on + strand at 5494.382 kb on - strand at 5494.394 kb on - strand at 5494.424 kb on + strand at 5494.439 kb on + strand at 5494.440 kb on - strand at 5494.440 kb on - strand at 5494.440 kb on - strand at 5494.444 kb on - strand at 5494.508 kb on + strand at 5494.515 kb on + strand at 5494.518 kb on + strand at 5494.558 kb on + strand at 5494.563 kb on + strand at 5494.563 kb on + strand at 5494.564 kb on - strand at 5494.564 kb on - strand at 5494.564 kb on - strand at 5494.575 kb on + strand at 5494.576 kb on - strand at 5494.597 kb on + strand at 5494.598 kb on - strand at 5494.633 kb on + strand at 5494.633 kb on + strand at 5494.713 kb on + strand, within PS417_25375 at 5494.722 kb on - strand, within PS417_25375 at 5494.723 kb on + strand, within PS417_25375 at 5494.723 kb on + strand, within PS417_25375 at 5494.723 kb on + strand, within PS417_25375 at 5494.724 kb on - strand, within PS417_25375 at 5494.724 kb on - strand, within PS417_25375 at 5494.724 kb on - strand, within PS417_25375 at 5494.724 kb on - strand, within PS417_25375 at 5494.724 kb on - strand, within PS417_25375 at 5494.724 kb on - strand, within PS417_25375 at 5494.724 kb on - strand, within PS417_25375 at 5494.727 kb on + strand, within PS417_25375 at 5494.727 kb on + strand, within PS417_25375 at 5494.809 kb on + strand, within PS417_25375 at 5494.866 kb on + strand, within PS417_25375 at 5494.866 kb on + strand, within PS417_25375 at 5494.866 kb on + strand, within PS417_25375 at 5494.866 kb on + strand, within PS417_25375 at 5494.866 kb on + strand, within PS417_25375 at 5494.867 kb on - strand, within PS417_25375 at 5495.012 kb on + strand, within PS417_25375 at 5495.027 kb on + strand, within PS417_25375 at 5495.161 kb on + strand, within PS417_25375 at 5495.161 kb on + strand, within PS417_25375 at 5495.162 kb on - strand, within PS417_25375 at 5495.162 kb on - strand, within PS417_25375 at 5495.162 kb on - strand, within PS417_25375 at 5495.310 kb on + strand, within PS417_25375 at 5495.311 kb on - strand, within PS417_25375 at 5495.321 kb on - strand, within PS417_25375 at 5495.462 kb on + strand, within PS417_25375 at 5495.516 kb on + strand, within PS417_25375 at 5495.516 kb on + strand, within PS417_25375 at 5495.516 kb on + strand, within PS417_25375 at 5495.516 kb on + strand, within PS417_25375 at 5495.516 kb on + strand, within PS417_25375 at 5495.517 kb on - strand, within PS417_25375 at 5495.517 kb on - strand, within PS417_25375 at 5495.517 kb on - strand, within PS417_25375 at 5495.517 kb on - strand, within PS417_25375 at 5495.517 kb on - strand at 5495.517 kb on - strand, within PS417_25375 at 5495.517 kb on - strand, within PS417_25375 at 5495.518 kb on + strand, within PS417_25375 at 5495.519 kb on - strand, within PS417_25375 at 5495.528 kb on + strand, within PS417_25375 at 5495.679 kb on + strand, within PS417_25375 at 5495.750 kb on - strand, within PS417_25375 at 5495.750 kb on - strand, within PS417_25375 at 5495.772 kb on - strand, within PS417_25375 at 5495.794 kb on - strand, within PS417_25375 at 5495.807 kb on + strand, within PS417_25375 at 5495.807 kb on + strand, within PS417_25375 at 5495.808 kb on - strand, within PS417_25375 at 5495.808 kb on - strand, within PS417_25375 at 5495.809 kb on + strand, within PS417_25375 at 5495.809 kb on + strand, within PS417_25375 at 5495.810 kb on - strand, within PS417_25375 at 5495.871 kb on + strand, within PS417_25375 at 5495.871 kb on + strand, within PS417_25375 at 5495.872 kb on - strand, within PS417_25375 at 5495.958 kb on + strand, within PS417_25375 at 5495.958 kb on + strand, within PS417_25375 at 5495.958 kb on + strand, within PS417_25375 at 5495.958 kb on + strand, within PS417_25375 at 5495.958 kb on + strand, within PS417_25375 at 5495.958 kb on + strand, within PS417_25375 at 5495.959 kb on - strand, within PS417_25375 at 5495.959 kb on - strand, within PS417_25375 at 5495.959 kb on - strand, within PS417_25375 at 5495.959 kb on - strand, within PS417_25375 at 5495.960 kb on + strand, within PS417_25375 at 5495.969 kb on + strand, within PS417_25375 at 5496.022 kb on - strand, within PS417_25375 at 5496.068 kb on + strand at 5496.077 kb on + strand, within PS417_25375 at 5496.077 kb on + strand, within PS417_25375 at 5496.078 kb on - strand, within PS417_25375 at 5496.194 kb on + strand, within PS417_25375 at 5496.305 kb on + strand, within PS417_25375 at 5496.316 kb on + strand, within PS417_25375 at 5496.316 kb on + strand, within PS417_25375 at 5496.316 kb on + strand, within PS417_25375 at 5496.316 kb on + strand, within PS417_25375 at 5496.316 kb on + strand, within PS417_25375 at 5496.316 kb on + strand, within PS417_25375 at 5496.317 kb on - strand, within PS417_25375 at 5496.317 kb on - strand, within PS417_25375 at 5496.375 kb on - strand, within PS417_25375 at 5496.376 kb on + strand, within PS417_25375 at 5496.376 kb on + strand, within PS417_25375 at 5496.376 kb on + strand, within PS417_25375 at 5496.377 kb on - strand, within PS417_25375 at 5496.377 kb on - strand, within PS417_25375 at 5496.377 kb on - strand, within PS417_25375 at 5496.377 kb on - strand, within PS417_25375 at 5496.377 kb on - strand, within PS417_25375 at 5496.377 kb on - strand, within PS417_25375 at 5496.377 kb on - strand at 5496.435 kb on - strand, within PS417_25375 at 5496.435 kb on - strand, within PS417_25375 at 5496.460 kb on - strand, within PS417_25375 at 5496.506 kb on + strand, within PS417_25375 at 5496.507 kb on - strand, within PS417_25375 at 5496.507 kb on - strand, within PS417_25375 at 5496.510 kb on - strand, within PS417_25375 at 5496.730 kb on + strand at 5496.736 kb on + strand at 5496.736 kb on + strand at 5496.737 kb on - strand at 5496.768 kb on + strand at 5496.768 kb on + strand at 5496.769 kb on - strand at 5496.769 kb on - strand at 5496.804 kb on - strand at 5496.882 kb on + strand at 5496.883 kb on - strand at 5496.945 kb on + strand at 5496.951 kb on + strand at 5496.978 kb on - strand at 5497.016 kb on - strand at 5497.028 kb on - strand at 5497.028 kb on - strand at 5497.028 kb on - strand at 5497.148 kb on + strand at 5497.149 kb on - strand at 5497.149 kb on - strand at 5497.151 kb on + strand at 5497.151 kb on + strand at 5497.152 kb on - strand at 5497.167 kb on + strand at 5497.167 kb on + strand at 5497.167 kb on + strand at 5497.242 kb on - strand at 5497.250 kb on + strand at 5497.323 kb on + strand at 5497.323 kb on + strand at 5497.324 kb on - strand at 5497.324 kb on - strand at 5497.338 kb on - strand at 5497.355 kb on + strand at 5497.432 kb on + strand at 5497.432 kb on + strand at 5497.432 kb on + strand at 5497.432 kb on + strand at 5497.433 kb on - strand at 5497.433 kb on - strand at 5497.433 kb on - strand at 5497.442 kb on + strand, within PS417_25380 at 5497.508 kb on + strand, within PS417_25380 at 5497.523 kb on - strand at 5497.525 kb on + strand, within PS417_25380 at 5497.525 kb on + strand, within PS417_25380 at 5497.525 kb on + strand, within PS417_25380 at 5497.562 kb on + strand, within PS417_25380 at 5497.606 kb on - strand at 5497.620 kb on + strand at 5497.652 kb on + strand at 5497.652 kb on + strand at 5497.653 kb on - strand at 5497.655 kb on + strand at 5497.655 kb on + strand at 5497.655 kb on + strand at 5497.656 kb on - strand at 5497.695 kb on + strand at 5497.723 kb on + strand at 5497.724 kb on - strand at 5497.724 kb on - strand at 5497.727 kb on + strand at 5497.755 kb on + strand at 5497.756 kb on - strand at 5497.767 kb on + strand at 5497.768 kb on - strand at 5497.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 5,493,587 - +0.7 5,493,587 - +2.2 5,493,610 - -0.8 5,493,610 - -0.0 5,493,707 + -1.2 5,493,812 + +1.6 5,493,813 - +0.7 5,493,869 - +0.6 5,493,885 + -0.4 5,493,889 + -0.2 5,493,889 + -1.2 5,493,890 - +1.6 5,493,890 - +1.6 5,493,891 + +0.7 5,493,933 + -1.4 5,493,933 + +1.3 5,493,934 - -0.4 5,493,942 + -1.3 5,493,942 + +3.3 5,493,944 + +0.2 5,493,944 + +0.1 5,493,945 - +1.5 5,493,945 - -0.1 5,494,116 + +0.8 5,494,116 + +0.2 5,494,167 - -0.0 5,494,170 - -0.6 5,494,228 + +1.7 5,494,228 + +1.3 5,494,311 - -0.1 5,494,331 - -0.0 5,494,381 + +1.6 5,494,382 - -0.2 5,494,394 - +1.2 5,494,424 + -1.0 5,494,439 + -1.1 5,494,440 - -0.6 5,494,440 - +1.0 5,494,440 - -1.8 5,494,444 - +1.8 5,494,508 + -0.5 5,494,515 + +0.2 5,494,518 + +0.1 5,494,558 + -0.7 5,494,563 + -0.1 5,494,563 + -0.0 5,494,564 - -0.7 5,494,564 - +0.8 5,494,564 - +3.2 5,494,575 + +0.6 5,494,576 - -1.3 5,494,597 + +0.8 5,494,598 - +1.6 5,494,633 + -0.5 5,494,633 + +1.0 5,494,713 + PS417_25375 0.12 +2.1 5,494,722 - PS417_25375 0.12 +1.6 5,494,723 + PS417_25375 0.12 -1.0 5,494,723 + PS417_25375 0.12 -0.4 5,494,723 + PS417_25375 0.12 +2.2 5,494,724 - PS417_25375 0.12 -0.0 5,494,724 - PS417_25375 0.12 +0.5 5,494,724 - PS417_25375 0.12 +1.1 5,494,724 - PS417_25375 0.12 +1.2 5,494,724 - PS417_25375 0.12 +2.0 5,494,724 - PS417_25375 0.12 +0.0 5,494,724 - PS417_25375 0.12 +1.0 5,494,727 + PS417_25375 0.12 -2.2 5,494,727 + PS417_25375 0.12 -1.9 5,494,809 + PS417_25375 0.16 -0.4 5,494,866 + PS417_25375 0.18 +0.2 5,494,866 + PS417_25375 0.18 +0.0 5,494,866 + PS417_25375 0.18 +0.8 5,494,866 + PS417_25375 0.18 -0.4 5,494,866 + PS417_25375 0.18 +0.5 5,494,867 - PS417_25375 0.18 -0.3 5,495,012 + PS417_25375 0.24 +2.1 5,495,027 + PS417_25375 0.25 +1.3 5,495,161 + PS417_25375 0.30 -1.5 5,495,161 + PS417_25375 0.30 -2.7 5,495,162 - PS417_25375 0.30 -1.2 5,495,162 - PS417_25375 0.30 -0.2 5,495,162 - PS417_25375 0.30 +0.9 5,495,310 + PS417_25375 0.36 -0.5 5,495,311 - PS417_25375 0.36 +8.0 5,495,321 - PS417_25375 0.36 -2.0 5,495,462 + PS417_25375 0.42 -2.0 5,495,516 + PS417_25375 0.44 +0.7 5,495,516 + PS417_25375 0.44 +0.1 5,495,516 + PS417_25375 0.44 -1.1 5,495,516 + PS417_25375 0.44 -0.1 5,495,516 + PS417_25375 0.44 +0.6 5,495,517 - PS417_25375 0.44 +0.0 5,495,517 - PS417_25375 0.44 +0.2 5,495,517 - PS417_25375 0.44 -1.1 5,495,517 - PS417_25375 0.44 -1.4 5,495,517 - +0.3 5,495,517 - PS417_25375 0.44 +0.3 5,495,517 - PS417_25375 0.44 +0.8 5,495,518 + PS417_25375 0.44 +0.5 5,495,519 - PS417_25375 0.44 +0.2 5,495,528 + PS417_25375 0.45 -0.2 5,495,679 + PS417_25375 0.51 +1.2 5,495,750 - PS417_25375 0.54 +1.1 5,495,750 - PS417_25375 0.54 +0.5 5,495,772 - PS417_25375 0.55 -1.3 5,495,794 - PS417_25375 0.55 -0.1 5,495,807 + PS417_25375 0.56 +2.2 5,495,807 + PS417_25375 0.56 -1.3 5,495,808 - PS417_25375 0.56 -0.7 5,495,808 - PS417_25375 0.56 -0.3 5,495,809 + PS417_25375 0.56 +0.2 5,495,809 + PS417_25375 0.56 +2.3 5,495,810 - PS417_25375 0.56 +0.1 5,495,871 + PS417_25375 0.59 -0.1 5,495,871 + PS417_25375 0.59 +0.6 5,495,872 - PS417_25375 0.59 -1.4 5,495,958 + PS417_25375 0.62 -0.8 5,495,958 + PS417_25375 0.62 -0.9 5,495,958 + PS417_25375 0.62 +0.0 5,495,958 + PS417_25375 0.62 -0.2 5,495,958 + PS417_25375 0.62 +1.5 5,495,958 + PS417_25375 0.62 +0.6 5,495,959 - PS417_25375 0.62 -0.8 5,495,959 - PS417_25375 0.62 +0.5 5,495,959 - PS417_25375 0.62 -0.7 5,495,959 - PS417_25375 0.62 -0.7 5,495,960 + PS417_25375 0.62 -0.2 5,495,969 + PS417_25375 0.62 -2.2 5,496,022 - PS417_25375 0.65 -1.1 5,496,068 + +1.2 5,496,077 + PS417_25375 0.67 -0.5 5,496,077 + PS417_25375 0.67 -0.2 5,496,078 - PS417_25375 0.67 -1.1 5,496,194 + PS417_25375 0.72 +0.6 5,496,305 + PS417_25375 0.76 -1.3 5,496,316 + PS417_25375 0.76 +0.1 5,496,316 + PS417_25375 0.76 -0.6 5,496,316 + PS417_25375 0.76 -1.3 5,496,316 + PS417_25375 0.76 +2.3 5,496,316 + PS417_25375 0.76 +0.2 5,496,316 + PS417_25375 0.76 -1.1 5,496,317 - PS417_25375 0.77 +0.8 5,496,317 - PS417_25375 0.77 -0.6 5,496,375 - PS417_25375 0.79 -0.2 5,496,376 + PS417_25375 0.79 +0.1 5,496,376 + PS417_25375 0.79 -0.1 5,496,376 + PS417_25375 0.79 -0.3 5,496,377 - PS417_25375 0.79 +1.0 5,496,377 - PS417_25375 0.79 -0.9 5,496,377 - PS417_25375 0.79 -1.7 5,496,377 - PS417_25375 0.79 -1.7 5,496,377 - PS417_25375 0.79 +0.1 5,496,377 - PS417_25375 0.79 -0.2 5,496,377 - +2.2 5,496,435 - PS417_25375 0.81 +1.8 5,496,435 - PS417_25375 0.81 +1.0 5,496,460 - PS417_25375 0.82 +1.2 5,496,506 + PS417_25375 0.84 +2.2 5,496,507 - PS417_25375 0.84 -0.9 5,496,507 - PS417_25375 0.84 -0.2 5,496,510 - PS417_25375 0.84 +1.3 5,496,730 + -0.2 5,496,736 + +0.2 5,496,736 + -1.9 5,496,737 - +0.0 5,496,768 + -1.8 5,496,768 + -0.5 5,496,769 - -1.6 5,496,769 - -1.3 5,496,804 - +1.8 5,496,882 + +0.8 5,496,883 - +0.6 5,496,945 + +0.1 5,496,951 + +0.8 5,496,978 - -1.0 5,497,016 - -0.3 5,497,028 - +0.1 5,497,028 - +1.8 5,497,028 - +0.6 5,497,148 + +0.6 5,497,149 - +0.6 5,497,149 - -0.5 5,497,151 + -0.9 5,497,151 + -0.3 5,497,152 - +0.9 5,497,167 + -1.1 5,497,167 + +5.7 5,497,167 + +0.2 5,497,242 - +2.2 5,497,250 + +0.6 5,497,323 + -1.6 5,497,323 + +0.4 5,497,324 - -0.6 5,497,324 - +0.1 5,497,338 - -1.1 5,497,355 + -1.0 5,497,432 + +1.6 5,497,432 + -1.8 5,497,432 + +0.3 5,497,432 + +0.4 5,497,433 - -1.0 5,497,433 - +0.4 5,497,433 - +1.6 5,497,442 + PS417_25380 0.10 -1.1 5,497,508 + PS417_25380 0.45 -0.5 5,497,523 - +1.4 5,497,525 + PS417_25380 0.54 +0.4 5,497,525 + PS417_25380 0.54 +1.6 5,497,525 + PS417_25380 0.54 -0.2 5,497,562 + PS417_25380 0.73 -0.3 5,497,606 - +0.2 5,497,620 + -0.5 5,497,652 + -0.7 5,497,652 + +1.5 5,497,653 - +0.2 5,497,655 + -0.8 5,497,655 + -1.0 5,497,655 + +1.0 5,497,656 - +6.1 5,497,695 + -0.4 5,497,723 + -0.1 5,497,724 - +0.0 5,497,724 - +0.6 5,497,727 + -0.2 5,497,755 + -0.2 5,497,756 - -1.8 5,497,767 + +0.7 5,497,768 - -0.1 5,497,768 - -0.6
Or see this region's nucleotide sequence