Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25100 and PS417_25105 overlap by 1 nucleotides PS417_25105 and PS417_25110 overlap by 4 nucleotides PS417_25110 and PS417_25115 are separated by 13 nucleotides
PS417_25100: PS417_25100 - hypothetical protein, at 5,442,436 to 5,443,827
_25100
PS417_25105: PS417_25105 - hypothetical protein, at 5,443,827 to 5,444,567
_25105
PS417_25110: PS417_25110 - capsular biosynthesis protein, at 5,444,564 to 5,445,289
_25110
PS417_25115: PS417_25115 - lipopolysaccharide biosynthesis protein, at 5,445,303 to 5,447,519
_25115
Position (kb) 5444
5445
5446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 5443.580 kb on + strand, within PS417_25100 at 5443.581 kb on - strand, within PS417_25100 at 5443.581 kb on - strand, within PS417_25100 at 5443.591 kb on + strand, within PS417_25100 at 5443.625 kb on + strand, within PS417_25100 at 5443.625 kb on + strand, within PS417_25100 at 5443.643 kb on + strand, within PS417_25100 at 5443.644 kb on - strand, within PS417_25100 at 5443.715 kb on + strand at 5443.722 kb on + strand at 5443.722 kb on + strand at 5443.723 kb on - strand at 5443.828 kb on + strand at 5443.828 kb on + strand at 5443.927 kb on - strand, within PS417_25105 at 5443.927 kb on - strand, within PS417_25105 at 5443.930 kb on + strand, within PS417_25105 at 5443.930 kb on + strand, within PS417_25105 at 5444.017 kb on + strand, within PS417_25105 at 5444.017 kb on + strand, within PS417_25105 at 5444.017 kb on + strand, within PS417_25105 at 5444.017 kb on + strand, within PS417_25105 at 5444.018 kb on - strand, within PS417_25105 at 5444.018 kb on - strand at 5444.018 kb on - strand, within PS417_25105 at 5444.084 kb on + strand, within PS417_25105 at 5444.084 kb on + strand, within PS417_25105 at 5444.085 kb on - strand, within PS417_25105 at 5444.085 kb on - strand, within PS417_25105 at 5444.085 kb on - strand, within PS417_25105 at 5444.340 kb on + strand, within PS417_25105 at 5444.350 kb on - strand, within PS417_25105 at 5444.483 kb on + strand, within PS417_25105 at 5444.483 kb on + strand, within PS417_25105 at 5444.483 kb on + strand, within PS417_25105 at 5444.955 kb on - strand, within PS417_25110 at 5444.993 kb on + strand, within PS417_25110 at 5444.993 kb on + strand, within PS417_25110 at 5444.993 kb on + strand, within PS417_25110 at 5444.994 kb on - strand, within PS417_25110 at 5445.139 kb on + strand, within PS417_25110 at 5445.139 kb on + strand, within PS417_25110 at 5445.172 kb on + strand, within PS417_25110 at 5445.172 kb on + strand, within PS417_25110 at 5445.172 kb on + strand, within PS417_25110 at 5445.328 kb on + strand at 5445.337 kb on + strand at 5445.484 kb on + strand at 5445.484 kb on + strand at 5445.484 kb on + strand at 5445.484 kb on + strand at 5445.485 kb on - strand at 5445.485 kb on - strand at 5445.485 kb on - strand at 5445.485 kb on - strand at 5445.485 kb on - strand at 5445.485 kb on - strand at 5445.502 kb on + strand at 5445.503 kb on - strand at 5445.852 kb on - strand, within PS417_25115 at 5445.932 kb on + strand, within PS417_25115 at 5446.164 kb on - strand, within PS417_25115 at 5446.182 kb on - strand, within PS417_25115 at 5446.182 kb on - strand, within PS417_25115 at 5446.191 kb on + strand, within PS417_25115 at 5446.224 kb on - strand, within PS417_25115 at 5446.277 kb on - strand, within PS417_25115
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 5,443,580 + PS417_25100 0.82 -0.1 5,443,581 - PS417_25100 0.82 +0.2 5,443,581 - PS417_25100 0.82 -1.0 5,443,591 + PS417_25100 0.83 +0.1 5,443,625 + PS417_25100 0.85 +2.5 5,443,625 + PS417_25100 0.85 -0.7 5,443,643 + PS417_25100 0.87 +1.4 5,443,644 - PS417_25100 0.87 -0.7 5,443,715 + +0.5 5,443,722 + +0.9 5,443,722 + -0.1 5,443,723 - -0.2 5,443,828 + -0.4 5,443,828 + +1.5 5,443,927 - PS417_25105 0.13 +7.4 5,443,927 - PS417_25105 0.13 +0.9 5,443,930 + PS417_25105 0.14 -0.3 5,443,930 + PS417_25105 0.14 -1.0 5,444,017 + PS417_25105 0.26 +1.0 5,444,017 + PS417_25105 0.26 +0.0 5,444,017 + PS417_25105 0.26 +0.5 5,444,017 + PS417_25105 0.26 -1.9 5,444,018 - PS417_25105 0.26 +0.9 5,444,018 - +0.9 5,444,018 - PS417_25105 0.26 -0.7 5,444,084 + PS417_25105 0.35 +1.2 5,444,084 + PS417_25105 0.35 +9.3 5,444,085 - PS417_25105 0.35 -1.4 5,444,085 - PS417_25105 0.35 -0.9 5,444,085 - PS417_25105 0.35 -0.9 5,444,340 + PS417_25105 0.69 -0.4 5,444,350 - PS417_25105 0.71 -1.0 5,444,483 + PS417_25105 0.89 -0.9 5,444,483 + PS417_25105 0.89 +0.0 5,444,483 + PS417_25105 0.89 -0.6 5,444,955 - PS417_25110 0.54 -1.3 5,444,993 + PS417_25110 0.59 -0.2 5,444,993 + PS417_25110 0.59 +1.6 5,444,993 + PS417_25110 0.59 -0.3 5,444,994 - PS417_25110 0.59 -3.0 5,445,139 + PS417_25110 0.79 -2.2 5,445,139 + PS417_25110 0.79 +0.1 5,445,172 + PS417_25110 0.84 -0.3 5,445,172 + PS417_25110 0.84 +1.5 5,445,172 + PS417_25110 0.84 -0.9 5,445,328 + +0.1 5,445,337 + +0.5 5,445,484 + -0.3 5,445,484 + -0.3 5,445,484 + -0.0 5,445,484 + +0.7 5,445,485 - -1.1 5,445,485 - -0.9 5,445,485 - -1.8 5,445,485 - -1.7 5,445,485 - -0.7 5,445,485 - +0.7 5,445,502 + -1.8 5,445,503 - -0.1 5,445,852 - PS417_25115 0.25 +2.0 5,445,932 + PS417_25115 0.28 -0.2 5,446,164 - PS417_25115 0.39 +0.3 5,446,182 - PS417_25115 0.40 +0.2 5,446,182 - PS417_25115 0.40 -0.6 5,446,191 + PS417_25115 0.40 -1.6 5,446,224 - PS417_25115 0.42 -0.3 5,446,277 - PS417_25115 0.44 -0.8
Or see this region's nucleotide sequence