Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23440 and PS417_23445 overlap by 1 nucleotides PS417_23445 and PS417_23450 are separated by 149 nucleotides PS417_23450 and PS417_23455 overlap by 11 nucleotides
PS417_23440: PS417_23440 - alpha/beta hydrolase, at 5,077,754 to 5,078,659
_23440
PS417_23445: PS417_23445 - aldolase, at 5,078,659 to 5,079,441
_23445
PS417_23450: PS417_23450 - membrane protein, at 5,079,591 to 5,080,277
_23450
PS417_23455: PS417_23455 - LrgA, at 5,080,267 to 5,080,638
_23455
Position (kb) 5078
5079
5080 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5077.812 kb on + strand at 5077.812 kb on + strand at 5077.813 kb on - strand at 5077.918 kb on + strand, within PS417_23440 at 5077.918 kb on + strand, within PS417_23440 at 5077.919 kb on - strand, within PS417_23440 at 5077.919 kb on - strand, within PS417_23440 at 5077.919 kb on - strand, within PS417_23440 at 5078.026 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.508 kb on + strand, within PS417_23440 at 5078.508 kb on + strand, within PS417_23440 at 5078.667 kb on + strand at 5078.670 kb on - strand at 5079.115 kb on + strand, within PS417_23445 at 5079.115 kb on + strand, within PS417_23445 at 5079.115 kb on + strand at 5079.153 kb on + strand at 5079.153 kb on + strand, within PS417_23445 at 5079.153 kb on + strand, within PS417_23445 at 5079.154 kb on - strand, within PS417_23445 at 5079.155 kb on + strand, within PS417_23445 at 5079.176 kb on + strand, within PS417_23445 at 5079.176 kb on + strand, within PS417_23445 at 5079.177 kb on - strand, within PS417_23445 at 5079.303 kb on + strand, within PS417_23445 at 5079.497 kb on - strand at 5079.497 kb on - strand at 5079.497 kb on - strand at 5079.567 kb on + strand at 5080.109 kb on - strand, within PS417_23450 at 5080.152 kb on + strand, within PS417_23450 at 5080.153 kb on - strand, within PS417_23450 at 5080.182 kb on + strand, within PS417_23450 at 5080.182 kb on + strand, within PS417_23450 at 5080.182 kb on + strand, within PS417_23450 at 5080.183 kb on - strand, within PS417_23450 at 5080.183 kb on - strand, within PS417_23450 at 5080.183 kb on - strand, within PS417_23450 at 5080.223 kb on + strand at 5080.223 kb on + strand at 5080.223 kb on + strand at 5080.225 kb on + strand at 5080.225 kb on + strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.282 kb on + strand at 5080.283 kb on - strand at 5080.397 kb on + strand, within PS417_23455 at 5080.397 kb on + strand, within PS417_23455 at 5080.398 kb on - strand, within PS417_23455
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 5,077,812 + +0.2 5,077,812 + +0.4 5,077,813 - -0.6 5,077,918 + PS417_23440 0.18 -0.4 5,077,918 + PS417_23440 0.18 +0.7 5,077,919 - PS417_23440 0.18 +0.7 5,077,919 - PS417_23440 0.18 +0.8 5,077,919 - PS417_23440 0.18 -3.0 5,078,026 + PS417_23440 0.30 -1.7 5,078,028 + PS417_23440 0.30 -0.7 5,078,028 + PS417_23440 0.30 -0.1 5,078,028 + PS417_23440 0.30 -1.3 5,078,028 + PS417_23440 0.30 +0.3 5,078,028 + PS417_23440 0.30 -0.3 5,078,028 + PS417_23440 0.30 -1.1 5,078,028 + PS417_23440 0.30 +0.2 5,078,028 + PS417_23440 0.30 -1.0 5,078,028 + PS417_23440 0.30 -1.8 5,078,029 - PS417_23440 0.30 +0.0 5,078,029 - PS417_23440 0.30 +0.1 5,078,029 - PS417_23440 0.30 +0.6 5,078,029 - PS417_23440 0.30 -0.4 5,078,029 - PS417_23440 0.30 +1.0 5,078,029 - PS417_23440 0.30 -0.5 5,078,029 - PS417_23440 0.30 -0.7 5,078,508 + PS417_23440 0.83 +1.4 5,078,508 + PS417_23440 0.83 -0.7 5,078,667 + +0.1 5,078,670 - -0.2 5,079,115 + PS417_23445 0.58 -1.4 5,079,115 + PS417_23445 0.58 -2.2 5,079,115 + +1.1 5,079,153 + +1.1 5,079,153 + PS417_23445 0.63 -2.5 5,079,153 + PS417_23445 0.63 +2.2 5,079,154 - PS417_23445 0.63 -0.2 5,079,155 + PS417_23445 0.63 +0.4 5,079,176 + PS417_23445 0.66 -2.5 5,079,176 + PS417_23445 0.66 -0.8 5,079,177 - PS417_23445 0.66 +1.1 5,079,303 + PS417_23445 0.82 -0.6 5,079,497 - -0.9 5,079,497 - -0.1 5,079,497 - +0.1 5,079,567 + -0.3 5,080,109 - PS417_23450 0.75 -2.1 5,080,152 + PS417_23450 0.82 -1.0 5,080,153 - PS417_23450 0.82 -0.5 5,080,182 + PS417_23450 0.86 -0.3 5,080,182 + PS417_23450 0.86 -0.1 5,080,182 + PS417_23450 0.86 -1.5 5,080,183 - PS417_23450 0.86 -0.5 5,080,183 - PS417_23450 0.86 -0.9 5,080,183 - PS417_23450 0.86 +1.8 5,080,223 + +0.2 5,080,223 + -0.4 5,080,223 + +0.3 5,080,225 + -2.3 5,080,225 + -2.0 5,080,226 - -1.1 5,080,226 - +0.4 5,080,226 - -0.7 5,080,226 - +1.0 5,080,226 - +1.3 5,080,226 - +0.6 5,080,282 + -0.5 5,080,283 - +0.6 5,080,397 + PS417_23455 0.35 -0.3 5,080,397 + PS417_23455 0.35 +1.1 5,080,398 - PS417_23455 0.35 -0.2
Or see this region's nucleotide sequence