Strain Fitness in Pseudomonas simiae WCS417 around PS417_02080

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02070 and PS417_02075 are separated by 29 nucleotidesPS417_02075 and PS417_02080 overlap by 8 nucleotidesPS417_02080 and PS417_02085 overlap by 17 nucleotidesPS417_02085 and PS417_02090 overlap by 4 nucleotides PS417_02070: PS417_02070 - membrane protein, at 464,765 to 465,427 _02070 PS417_02075: PS417_02075 - thioesterase, at 465,457 to 465,882 _02075 PS417_02080: PS417_02080 - histidine ammonia-lyase, at 465,875 to 467,416 _02080 PS417_02085: PS417_02085 - glycosyl transferase, at 467,400 to 468,335 _02085 PS417_02090: PS417_02090 - glycosyl transferase, at 468,332 to 469,066 _02090 Position (kb) 465 466 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 465.330 kb on - strand, within PS417_02070at 465.476 kb on - strandat 465.596 kb on + strand, within PS417_02075at 465.597 kb on - strand, within PS417_02075at 465.597 kb on - strand, within PS417_02075at 465.734 kb on + strand, within PS417_02075at 465.734 kb on + strand, within PS417_02075at 465.734 kb on + strand, within PS417_02075at 465.735 kb on - strand, within PS417_02075at 465.735 kb on - strand, within PS417_02075at 466.142 kb on + strand, within PS417_02080at 466.142 kb on + strand, within PS417_02080at 466.317 kb on + strand, within PS417_02080at 466.519 kb on + strand, within PS417_02080at 466.520 kb on - strand, within PS417_02080at 466.945 kb on - strand, within PS417_02080at 466.945 kb on - strandat 467.158 kb on - strand, within PS417_02080at 467.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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465,330 - PS417_02070 0.85 -0.8
465,476 - -0.4
465,596 + PS417_02075 0.33 +0.5
465,597 - PS417_02075 0.33 -0.1
465,597 - PS417_02075 0.33 -0.1
465,734 + PS417_02075 0.65 +0.3
465,734 + PS417_02075 0.65 +0.0
465,734 + PS417_02075 0.65 -2.7
465,735 - PS417_02075 0.65 +0.5
465,735 - PS417_02075 0.65 +0.5
466,142 + PS417_02080 0.17 -0.9
466,142 + PS417_02080 0.17 +1.4
466,317 + PS417_02080 0.29 +3.9
466,519 + PS417_02080 0.42 +3.2
466,520 - PS417_02080 0.42 +0.1
466,945 - PS417_02080 0.69 +0.3
466,945 - +1.6
467,158 - PS417_02080 0.83 -3.4
467,512 - +1.1

Or see this region's nucleotide sequence