Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20245 and PS417_20250 overlap by 4 nucleotides PS417_20250 and PS417_20255 are separated by 50 nucleotides PS417_20255 and PS417_20260 are separated by 10 nucleotides
PS417_20245: PS417_20245 - copper resistance protein CopD, at 4,397,143 to 4,397,997
_20245
PS417_20250: PS417_20250 - copper resistance protein CopC, at 4,397,994 to 4,398,380
_20250
PS417_20255: PS417_20255 - copper resistance protein CopB, at 4,398,431 to 4,399,246
_20255
PS417_20260: PS417_20260 - copper oxidase, at 4,399,257 to 4,400,963
_20260
Position (kb) 4398
4399
4400 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4397.591 kb on - strand, within PS417_20245 at 4397.591 kb on - strand, within PS417_20245 at 4397.912 kb on + strand at 4397.912 kb on + strand at 4397.913 kb on - strand at 4397.913 kb on - strand at 4398.070 kb on + strand, within PS417_20250 at 4398.116 kb on + strand, within PS417_20250 at 4398.116 kb on + strand, within PS417_20250 at 4398.117 kb on - strand, within PS417_20250 at 4398.117 kb on - strand, within PS417_20250 at 4398.369 kb on - strand at 4398.369 kb on - strand at 4398.498 kb on + strand at 4398.544 kb on - strand, within PS417_20255 at 4398.564 kb on - strand, within PS417_20255 at 4398.746 kb on + strand, within PS417_20255 at 4398.771 kb on + strand, within PS417_20255 at 4398.948 kb on - strand, within PS417_20255 at 4399.092 kb on + strand, within PS417_20255 at 4399.092 kb on + strand, within PS417_20255 at 4399.093 kb on - strand, within PS417_20255 at 4399.093 kb on - strand, within PS417_20255 at 4399.303 kb on + strand at 4399.304 kb on - strand at 4399.578 kb on - strand, within PS417_20260 at 4399.657 kb on + strand, within PS417_20260 at 4399.945 kb on + strand, within PS417_20260 at 4399.981 kb on + strand, within PS417_20260 at 4400.007 kb on + strand, within PS417_20260 at 4400.007 kb on + strand, within PS417_20260 at 4400.007 kb on + strand, within PS417_20260 at 4400.008 kb on - strand, within PS417_20260 at 4400.008 kb on - strand, within PS417_20260 at 4400.122 kb on + strand, within PS417_20260 at 4400.213 kb on + strand, within PS417_20260 at 4400.221 kb on + strand, within PS417_20260 at 4400.221 kb on + strand, within PS417_20260 at 4400.221 kb on + strand, within PS417_20260 at 4400.227 kb on + strand, within PS417_20260 at 4400.227 kb on + strand, within PS417_20260 at 4400.227 kb on + strand, within PS417_20260 at 4400.228 kb on - strand, within PS417_20260 at 4400.228 kb on - strand, within PS417_20260
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 4,397,591 - PS417_20245 0.52 -1.2 4,397,591 - PS417_20245 0.52 -0.7 4,397,912 + -0.6 4,397,912 + +0.3 4,397,913 - -1.0 4,397,913 - +1.9 4,398,070 + PS417_20250 0.20 +1.5 4,398,116 + PS417_20250 0.32 -0.4 4,398,116 + PS417_20250 0.32 -0.6 4,398,117 - PS417_20250 0.32 -1.0 4,398,117 - PS417_20250 0.32 -0.9 4,398,369 - -0.0 4,398,369 - -0.6 4,398,498 + +1.2 4,398,544 - PS417_20255 0.14 -1.9 4,398,564 - PS417_20255 0.16 -0.7 4,398,746 + PS417_20255 0.39 -1.1 4,398,771 + PS417_20255 0.42 -2.0 4,398,948 - PS417_20255 0.63 -0.7 4,399,092 + PS417_20255 0.81 +0.3 4,399,092 + PS417_20255 0.81 -1.3 4,399,093 - PS417_20255 0.81 -0.3 4,399,093 - PS417_20255 0.81 +0.9 4,399,303 + +0.3 4,399,304 - -0.5 4,399,578 - PS417_20260 0.19 -1.8 4,399,657 + PS417_20260 0.23 -0.4 4,399,945 + PS417_20260 0.40 +1.5 4,399,981 + PS417_20260 0.42 -1.1 4,400,007 + PS417_20260 0.44 +0.7 4,400,007 + PS417_20260 0.44 -0.7 4,400,007 + PS417_20260 0.44 +1.1 4,400,008 - PS417_20260 0.44 -0.4 4,400,008 - PS417_20260 0.44 -1.1 4,400,122 + PS417_20260 0.51 -2.2 4,400,213 + PS417_20260 0.56 +0.2 4,400,221 + PS417_20260 0.56 +0.9 4,400,221 + PS417_20260 0.56 -0.9 4,400,221 + PS417_20260 0.56 -0.3 4,400,227 + PS417_20260 0.57 +0.6 4,400,227 + PS417_20260 0.57 -1.2 4,400,227 + PS417_20260 0.57 -1.0 4,400,228 - PS417_20260 0.57 -1.5 4,400,228 - PS417_20260 0.57 +0.7
Or see this region's nucleotide sequence