Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01420 and PS417_01425 are separated by 451 nucleotides PS417_01425 and PS417_01430 are separated by 533 nucleotides
PS417_01420: PS417_01420 - histidine kinase, at 314,177 to 315,547
_01420
PS417_01425: PS417_01425 - AraC family transcriptional regulator, at 315,999 to 316,868
_01425
PS417_01430: PS417_01430 - chromosome segregation protein SMC, at 317,402 to 319,762
_01430
Position (kb) 315
316
317 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 315.257 kb on + strand, within PS417_01420 at 315.258 kb on - strand, within PS417_01420 at 315.260 kb on + strand, within PS417_01420 at 315.260 kb on + strand, within PS417_01420 at 315.260 kb on + strand, within PS417_01420 at 315.260 kb on + strand, within PS417_01420 at 315.261 kb on - strand, within PS417_01420 at 315.275 kb on + strand, within PS417_01420 at 315.276 kb on - strand, within PS417_01420 at 315.339 kb on - strand, within PS417_01420 at 315.358 kb on - strand, within PS417_01420 at 315.430 kb on + strand at 315.430 kb on + strand at 315.474 kb on + strand at 315.521 kb on + strand at 315.522 kb on - strand at 315.532 kb on + strand at 315.532 kb on + strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.533 kb on - strand at 315.639 kb on - strand at 315.639 kb on - strand at 315.641 kb on + strand at 315.695 kb on + strand at 315.749 kb on + strand at 315.749 kb on + strand at 315.749 kb on + strand at 315.965 kb on + strand at 315.965 kb on + strand at 315.965 kb on + strand at 315.978 kb on - strand at 316.026 kb on + strand at 316.056 kb on + strand at 316.056 kb on + strand at 316.156 kb on + strand, within PS417_01425 at 316.177 kb on - strand, within PS417_01425 at 316.177 kb on - strand, within PS417_01425 at 316.196 kb on - strand, within PS417_01425 at 316.362 kb on - strand, within PS417_01425 at 316.362 kb on - strand, within PS417_01425 at 316.395 kb on - strand, within PS417_01425 at 316.595 kb on - strand, within PS417_01425 at 316.851 kb on + strand at 316.852 kb on - strand at 316.852 kb on - strand at 316.852 kb on - strand at 316.998 kb on + strand at 316.998 kb on + strand at 316.999 kb on - strand at 316.999 kb on - strand at 317.022 kb on + strand at 317.022 kb on + strand at 317.023 kb on - strand at 317.023 kb on - strand at 317.101 kb on + strand at 317.146 kb on - strand at 317.155 kb on + strand at 317.156 kb on - strand at 317.158 kb on + strand at 317.158 kb on + strand at 317.158 kb on + strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.177 kb on + strand at 317.227 kb on - strand at 317.291 kb on + strand at 317.292 kb on - strand at 317.292 kb on - strand at 317.707 kb on + strand, within PS417_01430
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 315,257 + PS417_01420 0.79 +1.7 315,258 - PS417_01420 0.79 +1.0 315,260 + PS417_01420 0.79 -1.9 315,260 + PS417_01420 0.79 -0.0 315,260 + PS417_01420 0.79 -0.0 315,260 + PS417_01420 0.79 +0.8 315,261 - PS417_01420 0.79 +2.1 315,275 + PS417_01420 0.80 +0.4 315,276 - PS417_01420 0.80 -0.4 315,339 - PS417_01420 0.85 +0.3 315,358 - PS417_01420 0.86 -0.5 315,430 + -0.8 315,430 + +0.2 315,474 + +0.5 315,521 + +0.8 315,522 - -0.5 315,532 + -0.3 315,532 + -0.8 315,533 - +0.3 315,533 - +0.8 315,533 - +0.4 315,533 - +1.5 315,533 - +0.4 315,533 - +0.5 315,639 - +0.4 315,639 - -0.0 315,641 + -0.8 315,695 + +1.5 315,749 + -0.6 315,749 + +0.1 315,749 + -1.7 315,965 + +1.9 315,965 + +1.2 315,965 + +0.1 315,978 - +8.4 316,026 + -0.1 316,056 + -0.3 316,056 + -0.1 316,156 + PS417_01425 0.18 -0.6 316,177 - PS417_01425 0.20 +1.9 316,177 - PS417_01425 0.20 -2.0 316,196 - PS417_01425 0.23 -1.7 316,362 - PS417_01425 0.42 +1.1 316,362 - PS417_01425 0.42 +2.7 316,395 - PS417_01425 0.46 -1.4 316,595 - PS417_01425 0.69 +0.5 316,851 + -1.5 316,852 - -2.2 316,852 - -1.4 316,852 - +1.9 316,998 + +0.5 316,998 + -0.4 316,999 - -1.9 316,999 - +0.2 317,022 + -0.1 317,022 + +2.5 317,023 - -0.8 317,023 - -1.2 317,101 + +0.5 317,146 - -0.5 317,155 + +2.7 317,156 - -0.1 317,158 + -0.0 317,158 + -0.3 317,158 + +0.5 317,159 - +1.0 317,159 - -1.5 317,177 + -1.0 317,227 - +0.3 317,291 + -0.8 317,292 - +0.0 317,292 - -1.8 317,707 + PS417_01430 0.13 +2.3
Or see this region's nucleotide sequence