Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01265 and PS417_01270 overlap by 4 nucleotides PS417_01270 and PS417_01275 are separated by 97 nucleotides PS417_01275 and PS417_01280 are separated by 132 nucleotides PS417_01280 and PS417_01285 are separated by 141 nucleotides
PS417_01265: PS417_01265 - CbbBc protein, at 274,601 to 276,949
_01265
PS417_01270: PS417_01270 - iron ABC transporter substrate-binding protein, at 276,946 to 277,785
_01270
PS417_01275: PS417_01275 - LysR family transcriptional regulator, at 277,883 to 278,770
_01275
PS417_01280: PS417_01280 - peptidoglycan-binding protein LysM, at 278,903 to 279,343
_01280
PS417_01285: PS417_01285 - haloacid dehalogenase, at 279,485 to 280,147
_01285
Position (kb) 277
278
279 Strain fitness (log2 ratio) -2
-1
0
1
2 at 276.897 kb on + strand at 276.897 kb on + strand at 277.283 kb on + strand, within PS417_01270 at 277.367 kb on - strand, within PS417_01270 at 277.709 kb on + strand at 277.710 kb on - strand at 277.794 kb on - strand at 278.266 kb on - strand, within PS417_01275 at 278.318 kb on - strand at 278.335 kb on - strand, within PS417_01275 at 278.448 kb on - strand, within PS417_01275 at 278.448 kb on - strand, within PS417_01275 at 278.548 kb on - strand, within PS417_01275 at 278.808 kb on + strand at 278.902 kb on + strand at 278.902 kb on + strand at 278.903 kb on - strand at 278.908 kb on + strand at 279.159 kb on + strand, within PS417_01280 at 279.223 kb on + strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.342 kb on - strand at 279.420 kb on - strand at 279.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 276,897 + +0.3 276,897 + -1.3 277,283 + PS417_01270 0.40 +0.1 277,367 - PS417_01270 0.50 -1.6 277,709 + -0.8 277,710 - -0.2 277,794 - +1.7 278,266 - PS417_01275 0.43 -1.9 278,318 - +1.9 278,335 - PS417_01275 0.51 -1.0 278,448 - PS417_01275 0.64 -1.3 278,448 - PS417_01275 0.64 -0.7 278,548 - PS417_01275 0.75 -1.1 278,808 + -0.3 278,902 + +1.1 278,902 + +0.7 278,903 - -0.9 278,908 + -0.4 279,159 + PS417_01280 0.58 -0.7 279,223 + PS417_01280 0.73 -0.6 279,258 - PS417_01280 0.80 -0.6 279,258 - PS417_01280 0.80 +0.6 279,342 - -1.5 279,420 - -0.8 279,511 - -1.7
Or see this region's nucleotide sequence