Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01120 and PS417_01125 are separated by 179 nucleotides PS417_01125 and PS417_01130 are separated by 108 nucleotides
PS417_01120: PS417_01120 - choline transporter, at 245,049 to 247,049
_01120
PS417_01125: PS417_01125 - cysteine desulfhydrase, at 247,229 to 248,557
_01125
PS417_01130: PS417_01130 - L-glyceraldehyde 3-phosphate reductase, at 248,666 to 249,703
_01130
Position (kb) 247
248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 246.244 kb on - strand, within PS417_01120 at 246.262 kb on - strand, within PS417_01120 at 246.353 kb on + strand, within PS417_01120 at 246.353 kb on + strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.556 kb on - strand, within PS417_01120 at 246.684 kb on + strand, within PS417_01120 at 246.855 kb on + strand at 246.957 kb on + strand at 246.957 kb on + strand at 246.958 kb on - strand at 246.972 kb on + strand at 247.012 kb on - strand at 247.151 kb on + strand at 247.151 kb on + strand at 247.255 kb on + strand at 247.255 kb on + strand at 247.256 kb on - strand at 247.279 kb on + strand at 247.418 kb on + strand, within PS417_01125 at 247.463 kb on + strand, within PS417_01125 at 247.464 kb on - strand, within PS417_01125 at 247.635 kb on - strand, within PS417_01125 at 247.748 kb on - strand, within PS417_01125 at 247.748 kb on - strand, within PS417_01125 at 247.883 kb on + strand, within PS417_01125 at 247.884 kb on - strand, within PS417_01125 at 247.884 kb on - strand, within PS417_01125 at 247.884 kb on - strand, within PS417_01125 at 247.902 kb on - strand, within PS417_01125 at 247.902 kb on - strand, within PS417_01125 at 247.904 kb on + strand, within PS417_01125 at 248.103 kb on - strand, within PS417_01125 at 248.103 kb on - strand, within PS417_01125 at 248.297 kb on + strand, within PS417_01125 at 248.298 kb on - strand, within PS417_01125 at 248.352 kb on - strand, within PS417_01125 at 248.528 kb on + strand at 248.528 kb on + strand at 248.528 kb on + strand at 248.529 kb on - strand at 248.529 kb on - strand at 248.529 kb on - strand at 248.537 kb on + strand at 248.537 kb on + strand at 248.537 kb on + strand at 248.538 kb on - strand at 248.538 kb on - strand at 248.538 kb on - strand at 248.620 kb on - strand at 248.626 kb on - strand at 248.638 kb on + strand at 248.639 kb on - strand at 248.672 kb on + strand at 248.672 kb on + strand at 248.672 kb on + strand at 248.673 kb on - strand at 248.673 kb on - strand at 248.673 kb on - strand at 248.673 kb on - strand at 248.673 kb on - strand at 248.702 kb on - strand at 248.861 kb on + strand, within PS417_01130 at 248.862 kb on - strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.254 kb on + strand, within PS417_01130 at 249.365 kb on + strand, within PS417_01130 at 249.365 kb on + strand, within PS417_01130
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 246,244 - PS417_01120 0.60 +0.0 246,262 - PS417_01120 0.61 -1.3 246,353 + PS417_01120 0.65 +0.7 246,353 + PS417_01120 0.65 -0.7 246,354 - PS417_01120 0.65 -0.9 246,354 - PS417_01120 0.65 -0.6 246,354 - PS417_01120 0.65 +0.1 246,354 - PS417_01120 0.65 +0.2 246,354 - PS417_01120 0.65 -0.0 246,556 - PS417_01120 0.75 -2.8 246,684 + PS417_01120 0.82 -0.1 246,855 + +0.5 246,957 + -0.7 246,957 + -0.9 246,958 - -0.3 246,972 + +0.9 247,012 - +0.3 247,151 + -0.9 247,151 + -1.4 247,255 + +1.4 247,255 + -0.7 247,256 - +0.1 247,279 + -0.3 247,418 + PS417_01125 0.14 -1.0 247,463 + PS417_01125 0.18 +0.3 247,464 - PS417_01125 0.18 +1.1 247,635 - PS417_01125 0.31 -0.4 247,748 - PS417_01125 0.39 +0.1 247,748 - PS417_01125 0.39 +1.0 247,883 + PS417_01125 0.49 +1.5 247,884 - PS417_01125 0.49 +1.2 247,884 - PS417_01125 0.49 -0.2 247,884 - PS417_01125 0.49 +0.6 247,902 - PS417_01125 0.51 +1.4 247,902 - PS417_01125 0.51 +1.2 247,904 + PS417_01125 0.51 +0.9 248,103 - PS417_01125 0.66 +0.1 248,103 - PS417_01125 0.66 +1.2 248,297 + PS417_01125 0.80 -2.8 248,298 - PS417_01125 0.80 -0.9 248,352 - PS417_01125 0.84 +1.7 248,528 + -1.1 248,528 + +0.0 248,528 + -1.8 248,529 - +0.2 248,529 - -1.0 248,529 - +2.3 248,537 + +0.4 248,537 + -0.8 248,537 + +1.2 248,538 - -1.0 248,538 - -0.6 248,538 - -0.2 248,620 - +1.3 248,626 - +1.4 248,638 + +2.7 248,639 - +0.2 248,672 + -0.3 248,672 + -0.1 248,672 + +1.2 248,673 - -0.9 248,673 - -0.5 248,673 - +0.3 248,673 - -1.9 248,673 - -0.5 248,702 - -0.3 248,861 + PS417_01130 0.19 -0.8 248,862 - PS417_01130 0.19 +1.4 249,011 + PS417_01130 0.33 +0.7 249,011 + PS417_01130 0.33 -2.8 249,011 + PS417_01130 0.33 -0.6 249,254 + PS417_01130 0.57 +0.2 249,365 + PS417_01130 0.67 +0.9 249,365 + PS417_01130 0.67 +1.2
Or see this region's nucleotide sequence