Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01110 and PS417_01115 are separated by 165 nucleotides PS417_01115 and PS417_01120 are separated by 270 nucleotides
PS417_01110: PS417_01110 - cysteine desulfhydrase, at 242,694 to 243,686
_01110
PS417_01115: PS417_01115 - serine acetyltransferase, at 243,852 to 244,778
_01115
PS417_01120: PS417_01120 - choline transporter, at 245,049 to 247,049
_01120
Position (kb) 243
244
245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 242.911 kb on + strand, within PS417_01110 at 242.911 kb on + strand, within PS417_01110 at 243.178 kb on - strand, within PS417_01110 at 243.181 kb on + strand, within PS417_01110 at 243.182 kb on - strand, within PS417_01110 at 243.227 kb on - strand, within PS417_01110 at 243.358 kb on + strand, within PS417_01110 at 243.358 kb on + strand, within PS417_01110 at 243.474 kb on + strand, within PS417_01110 at 243.517 kb on + strand, within PS417_01110 at 243.518 kb on - strand, within PS417_01110 at 243.580 kb on + strand, within PS417_01110 at 243.580 kb on + strand, within PS417_01110 at 243.580 kb on + strand, within PS417_01110 at 243.581 kb on - strand, within PS417_01110 at 243.581 kb on - strand, within PS417_01110 at 243.691 kb on - strand at 243.704 kb on - strand at 243.704 kb on - strand at 243.707 kb on + strand at 243.708 kb on - strand at 243.708 kb on - strand at 243.720 kb on + strand at 243.721 kb on - strand at 243.818 kb on + strand at 243.819 kb on - strand at 243.849 kb on - strand at 243.881 kb on - strand at 244.075 kb on - strand, within PS417_01115 at 244.531 kb on - strand, within PS417_01115 at 244.635 kb on + strand, within PS417_01115 at 244.734 kb on - strand at 244.855 kb on + strand at 244.870 kb on + strand at 244.870 kb on + strand at 244.871 kb on - strand at 244.875 kb on + strand at 244.875 kb on + strand at 244.876 kb on - strand at 244.876 kb on - strand at 244.883 kb on - strand at 244.886 kb on + strand at 244.924 kb on + strand at 244.925 kb on - strand at 244.991 kb on + strand at 244.992 kb on - strand at 244.992 kb on - strand at 245.013 kb on + strand at 245.014 kb on - strand at 245.139 kb on - strand at 245.141 kb on + strand at 245.142 kb on - strand at 245.223 kb on + strand at 245.223 kb on + strand at 245.223 kb on + strand at 245.223 kb on + strand at 245.224 kb on - strand at 245.244 kb on + strand at 245.291 kb on - strand, within PS417_01120 at 245.291 kb on - strand, within PS417_01120 at 245.328 kb on + strand, within PS417_01120 at 245.655 kb on - strand, within PS417_01120 at 245.718 kb on + strand, within PS417_01120 at 245.719 kb on - strand, within PS417_01120 at 245.719 kb on - strand, within PS417_01120
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 242,911 + PS417_01110 0.22 -0.2 242,911 + PS417_01110 0.22 -2.4 243,178 - PS417_01110 0.49 -1.0 243,181 + PS417_01110 0.49 -1.2 243,182 - PS417_01110 0.49 -1.2 243,227 - PS417_01110 0.54 -3.0 243,358 + PS417_01110 0.67 -1.4 243,358 + PS417_01110 0.67 -1.7 243,474 + PS417_01110 0.79 +0.3 243,517 + PS417_01110 0.83 -1.1 243,518 - PS417_01110 0.83 -1.5 243,580 + PS417_01110 0.89 -0.1 243,580 + PS417_01110 0.89 -0.9 243,580 + PS417_01110 0.89 -0.3 243,581 - PS417_01110 0.89 -0.2 243,581 - PS417_01110 0.89 -2.7 243,691 - -0.3 243,704 - -1.5 243,704 - +0.1 243,707 + +0.1 243,708 - -0.7 243,708 - +1.4 243,720 + -0.2 243,721 - +3.7 243,818 + -1.0 243,819 - +1.9 243,849 - +0.2 243,881 - -0.1 244,075 - PS417_01115 0.24 +0.5 244,531 - PS417_01115 0.73 -1.1 244,635 + PS417_01115 0.84 +0.8 244,734 - +0.3 244,855 + +0.2 244,870 + +0.4 244,870 + +0.8 244,871 - +0.5 244,875 + +1.6 244,875 + -0.6 244,876 - -0.3 244,876 - +1.9 244,883 - -0.4 244,886 + -0.4 244,924 + -0.6 244,925 - +0.1 244,991 + +0.2 244,992 - +0.5 244,992 - -1.8 245,013 + -0.2 245,014 - -0.9 245,139 - +2.7 245,141 + -0.9 245,142 - +0.4 245,223 + -0.4 245,223 + +1.7 245,223 + -0.5 245,223 + +2.2 245,224 - -0.6 245,244 + -0.1 245,291 - PS417_01120 0.12 +0.7 245,291 - PS417_01120 0.12 -0.7 245,328 + PS417_01120 0.14 -1.1 245,655 - PS417_01120 0.30 +1.5 245,718 + PS417_01120 0.33 +0.6 245,719 - PS417_01120 0.33 +1.1 245,719 - PS417_01120 0.33 +1.4
Or see this region's nucleotide sequence