Strain Fitness in Pseudomonas simiae WCS417 around PS417_05725

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05710 and PS417_05715 are separated by 3 nucleotidesPS417_05715 and PS417_05720 are separated by 9 nucleotidesPS417_05720 and PS417_05725 overlap by 4 nucleotidesPS417_05725 and PS417_05730 overlap by 4 nucleotidesPS417_05730 and PS417_05735 overlap by 4 nucleotides PS417_05710: PS417_05710 - hypothetical protein, at 1,282,394 to 1,282,909 _05710 PS417_05715: PS417_05715 - baseplate assembly protein, at 1,282,913 to 1,283,524 _05715 PS417_05720: PS417_05720 - phage baseplate protein, at 1,283,534 to 1,283,866 _05720 PS417_05725: PS417_05725 - baseplate J protein, at 1,283,863 to 1,284,858 _05725 PS417_05730: PS417_05730 - tail protein, at 1,284,855 to 1,285,493 _05730 PS417_05735: PS417_05735 - tail fiber protein, at 1,285,490 to 1,286,020 _05735 Position (kb) 1283 1284 1285Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1282.908 kb on - strandat 1282.929 kb on + strandat 1282.930 kb on - strandat 1282.930 kb on - strandat 1282.995 kb on - strand, within PS417_05715at 1283.008 kb on + strand, within PS417_05715at 1283.008 kb on + strand, within PS417_05715at 1283.009 kb on - strand, within PS417_05715at 1283.009 kb on - strand, within PS417_05715at 1283.056 kb on + strand, within PS417_05715at 1283.057 kb on - strand, within PS417_05715at 1283.178 kb on - strand, within PS417_05715at 1283.230 kb on + strand, within PS417_05715at 1283.230 kb on + strand, within PS417_05715at 1283.231 kb on - strand, within PS417_05715at 1283.231 kb on - strand, within PS417_05715at 1284.091 kb on + strand, within PS417_05725at 1284.092 kb on - strand, within PS417_05725at 1284.092 kb on - strand, within PS417_05725at 1284.262 kb on + strandat 1284.262 kb on + strand, within PS417_05725at 1284.262 kb on + strand, within PS417_05725at 1284.263 kb on - strand, within PS417_05725at 1284.263 kb on - strand, within PS417_05725at 1284.385 kb on + strand, within PS417_05725at 1284.386 kb on - strand, within PS417_05725at 1284.386 kb on - strand, within PS417_05725at 1284.386 kb on - strand, within PS417_05725at 1284.386 kb on - strand, within PS417_05725at 1284.407 kb on - strand, within PS417_05725at 1284.492 kb on + strand, within PS417_05725at 1284.599 kb on - strand, within PS417_05725at 1284.683 kb on - strand, within PS417_05725at 1284.849 kb on + strandat 1284.854 kb on + strandat 1284.854 kb on + strandat 1284.891 kb on - strandat 1284.891 kb on - strandat 1285.005 kb on + strand, within PS417_05730at 1285.006 kb on - strand, within PS417_05730at 1285.006 kb on - strand, within PS417_05730at 1285.201 kb on - strand, within PS417_05730at 1285.271 kb on + strand, within PS417_05730at 1285.272 kb on - strand, within PS417_05730at 1285.431 kb on - strandat 1285.455 kb on + strandat 1285.456 kb on - strandat 1285.456 kb on - strandat 1285.456 kb on - strandat 1285.757 kb on + strandat 1285.787 kb on + strand, within PS417_05735at 1285.814 kb on + strand, within PS417_05735at 1285.815 kb on - strand, within PS417_05735at 1285.815 kb on - strand, within PS417_05735at 1285.817 kb on - strand, within PS417_05735

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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1,282,908 - -0.9
1,282,929 + -0.4
1,282,930 - +2.5
1,282,930 - +0.3
1,282,995 - PS417_05715 0.13 -0.4
1,283,008 + PS417_05715 0.16 -1.1
1,283,008 + PS417_05715 0.16 -0.8
1,283,009 - PS417_05715 0.16 +1.5
1,283,009 - PS417_05715 0.16 +0.7
1,283,056 + PS417_05715 0.23 +0.1
1,283,057 - PS417_05715 0.24 +0.3
1,283,178 - PS417_05715 0.43 +0.1
1,283,230 + PS417_05715 0.52 -1.3
1,283,230 + PS417_05715 0.52 -0.8
1,283,231 - PS417_05715 0.52 -2.9
1,283,231 - PS417_05715 0.52 -0.0
1,284,091 + PS417_05725 0.23 +0.2
1,284,092 - PS417_05725 0.23 +0.1
1,284,092 - PS417_05725 0.23 -0.0
1,284,262 + +0.5
1,284,262 + PS417_05725 0.40 +2.0
1,284,262 + PS417_05725 0.40 +0.3
1,284,263 - PS417_05725 0.40 -0.3
1,284,263 - PS417_05725 0.40 +5.4
1,284,385 + PS417_05725 0.52 -0.4
1,284,386 - PS417_05725 0.53 +0.7
1,284,386 - PS417_05725 0.53 +0.0
1,284,386 - PS417_05725 0.53 +0.0
1,284,386 - PS417_05725 0.53 -0.2
1,284,407 - PS417_05725 0.55 -1.6
1,284,492 + PS417_05725 0.63 +1.9
1,284,599 - PS417_05725 0.74 +0.5
1,284,683 - PS417_05725 0.82 -1.6
1,284,849 + -0.3
1,284,854 + +0.7
1,284,854 + -0.1
1,284,891 - +0.1
1,284,891 - -0.1
1,285,005 + PS417_05730 0.23 -0.5
1,285,006 - PS417_05730 0.24 -0.9
1,285,006 - PS417_05730 0.24 -2.0
1,285,201 - PS417_05730 0.54 -0.1
1,285,271 + PS417_05730 0.65 -0.3
1,285,272 - PS417_05730 0.65 -1.5
1,285,431 - -0.5
1,285,455 + -0.0
1,285,456 - +0.0
1,285,456 - +2.0
1,285,456 - +0.4
1,285,757 + +0.6
1,285,787 + PS417_05735 0.56 +0.5
1,285,814 + PS417_05735 0.61 -2.3
1,285,815 - PS417_05735 0.61 +0.5
1,285,815 - PS417_05735 0.61 +2.1
1,285,817 - PS417_05735 0.62 -0.9

Or see this region's nucleotide sequence