Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04075 and PS417_04080 are separated by 304 nucleotides PS417_04080 and PS417_04085 are separated by 258 nucleotides
PS417_04075: PS417_04075 - peptide ABC transporter substrate-binding protein, at 914,462 to 916,066
_04075
PS417_04080: PS417_04080 - peptide ABC transporter substrate-binding protein, at 916,371 to 917,999
_04080
PS417_04085: PS417_04085 - peptide ABC transporter substrate-binding protein, at 918,258 to 919,859
_04085
Position (kb) 916
917
918 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 915.397 kb on - strand, within PS417_04075 at 915.397 kb on - strand, within PS417_04075 at 915.802 kb on - strand, within PS417_04075 at 915.892 kb on - strand, within PS417_04075 at 915.931 kb on - strand at 915.931 kb on - strand at 916.057 kb on + strand at 916.088 kb on + strand at 916.089 kb on - strand at 916.089 kb on - strand at 916.218 kb on + strand at 916.246 kb on - strand at 916.246 kb on - strand at 916.281 kb on - strand at 916.314 kb on + strand at 916.347 kb on - strand at 916.372 kb on + strand at 916.372 kb on + strand at 916.373 kb on - strand at 916.396 kb on + strand at 916.397 kb on - strand at 916.459 kb on + strand at 916.509 kb on - strand at 916.524 kb on - strand at 916.524 kb on - strand at 916.526 kb on - strand at 916.748 kb on - strand, within PS417_04080 at 917.116 kb on + strand, within PS417_04080 at 917.270 kb on + strand, within PS417_04080 at 917.656 kb on - strand, within PS417_04080 at 917.656 kb on - strand, within PS417_04080 at 917.869 kb on + strand at 917.993 kb on + strand at 917.994 kb on - strand at 918.068 kb on - strand at 918.068 kb on - strand at 918.068 kb on - strand at 918.166 kb on - strand at 918.232 kb on + strand at 918.259 kb on + strand at 918.259 kb on + strand at 918.263 kb on + strand at 918.263 kb on + strand at 918.263 kb on + strand at 918.264 kb on - strand at 918.264 kb on - strand at 918.264 kb on - strand at 918.268 kb on - strand at 918.371 kb on + strand at 918.372 kb on - strand at 918.523 kb on + strand, within PS417_04085 at 918.523 kb on + strand, within PS417_04085 at 918.575 kb on - strand, within PS417_04085 at 918.575 kb on - strand, within PS417_04085 at 918.617 kb on - strand, within PS417_04085 at 918.631 kb on + strand, within PS417_04085 at 918.631 kb on + strand, within PS417_04085 at 918.632 kb on - strand, within PS417_04085 at 918.778 kb on - strand, within PS417_04085 at 918.805 kb on + strand at 918.805 kb on + strand, within PS417_04085 at 918.832 kb on + strand, within PS417_04085 at 918.833 kb on - strand, within PS417_04085 at 918.833 kb on - strand, within PS417_04085 at 918.976 kb on + strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 915,397 - PS417_04075 0.58 -1.4 915,397 - PS417_04075 0.58 +1.2 915,802 - PS417_04075 0.83 -1.4 915,892 - PS417_04075 0.89 -1.3 915,931 - +0.8 915,931 - -0.0 916,057 + -1.4 916,088 + -0.7 916,089 - +1.2 916,089 - +1.2 916,218 + +0.6 916,246 - +0.8 916,246 - +6.3 916,281 - +0.9 916,314 + -0.5 916,347 - +0.8 916,372 + -1.5 916,372 + +0.6 916,373 - +1.7 916,396 + -0.7 916,397 - +0.4 916,459 + -0.7 916,509 - -1.0 916,524 - -0.2 916,524 - +1.7 916,526 - -1.3 916,748 - PS417_04080 0.23 -2.1 917,116 + PS417_04080 0.46 -0.7 917,270 + PS417_04080 0.55 -1.7 917,656 - PS417_04080 0.79 -2.1 917,656 - PS417_04080 0.79 +0.6 917,869 + +0.3 917,993 + -0.1 917,994 - -1.3 918,068 - -0.8 918,068 - -0.2 918,068 - +0.3 918,166 - -0.4 918,232 + +1.1 918,259 + -1.4 918,259 + +1.0 918,263 + +1.1 918,263 + +1.0 918,263 + -0.7 918,264 - -0.5 918,264 - +0.4 918,264 - -0.4 918,268 - +1.1 918,371 + +0.4 918,372 - -0.4 918,523 + PS417_04085 0.17 -0.4 918,523 + PS417_04085 0.17 -0.2 918,575 - PS417_04085 0.20 -0.9 918,575 - PS417_04085 0.20 +0.1 918,617 - PS417_04085 0.22 +1.5 918,631 + PS417_04085 0.23 +0.4 918,631 + PS417_04085 0.23 -0.8 918,632 - PS417_04085 0.23 -1.0 918,778 - PS417_04085 0.32 -2.1 918,805 + +0.6 918,805 + PS417_04085 0.34 -0.0 918,832 + PS417_04085 0.36 +0.3 918,833 - PS417_04085 0.36 +0.0 918,833 - PS417_04085 0.36 -0.0 918,976 + PS417_04085 0.45 -0.7 918,977 - PS417_04085 0.45 +1.7 918,977 - PS417_04085 0.45 -0.1 918,977 - PS417_04085 0.45 -0.2
Or see this region's nucleotide sequence