Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03700 and PS417_03705 are separated by 110 nucleotides PS417_03705 and PS417_03710 are separated by 101 nucleotides
PS417_03700: PS417_03700 - TonB-dependent receptor, at 836,498 to 838,594
_03700
PS417_03705: PS417_03705 - 2-alkenal reductase, at 838,705 to 839,859
_03705
PS417_03710: PS417_03710 - metal-binding protein, at 839,961 to 840,719
_03710
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 838.060 kb on + strand, within PS417_03700 at 838.061 kb on - strand, within PS417_03700 at 838.061 kb on - strand, within PS417_03700 at 838.128 kb on + strand, within PS417_03700 at 838.227 kb on + strand, within PS417_03700 at 838.227 kb on + strand, within PS417_03700 at 838.228 kb on - strand, within PS417_03700 at 838.261 kb on - strand, within PS417_03700 at 838.267 kb on - strand, within PS417_03700 at 838.476 kb on + strand at 838.476 kb on + strand at 838.477 kb on - strand at 838.597 kb on + strand at 838.597 kb on + strand at 838.597 kb on + strand at 838.598 kb on - strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.671 kb on - strand at 838.671 kb on - strand at 838.706 kb on + strand at 838.707 kb on - strand at 838.792 kb on + strand at 838.792 kb on + strand at 839.510 kb on + strand, within PS417_03705 at 839.652 kb on - strand, within PS417_03705 at 839.713 kb on + strand, within PS417_03705 at 839.713 kb on + strand, within PS417_03705 at 839.713 kb on + strand, within PS417_03705 at 839.916 kb on - strand at 839.916 kb on - strand at 839.918 kb on - strand at 839.918 kb on - strand at 839.918 kb on - strand at 839.918 kb on - strand at 839.949 kb on + strand at 839.950 kb on - strand at 839.950 kb on - strand at 839.961 kb on - strand at 840.162 kb on + strand, within PS417_03710 at 840.507 kb on + strand, within PS417_03710 at 840.507 kb on + strand, within PS417_03710 at 840.508 kb on - strand, within PS417_03710 at 840.543 kb on + strand, within PS417_03710 at 840.543 kb on + strand, within PS417_03710 at 840.544 kb on - strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.644 kb on - strand at 840.758 kb on + strand at 840.758 kb on + strand at 840.773 kb on + strand at 840.807 kb on + strand at 840.807 kb on + strand at 840.808 kb on - strand at 840.808 kb on - strand at 840.845 kb on + strand at 840.845 kb on + strand at 840.845 kb on + strand at 840.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 838,060 + PS417_03700 0.74 -0.7 838,061 - PS417_03700 0.75 +1.0 838,061 - PS417_03700 0.75 +0.3 838,128 + PS417_03700 0.78 -0.3 838,227 + PS417_03700 0.82 -0.9 838,227 + PS417_03700 0.82 -0.5 838,228 - PS417_03700 0.82 -1.3 838,261 - PS417_03700 0.84 -0.5 838,267 - PS417_03700 0.84 -1.1 838,476 + -0.6 838,476 + -1.3 838,477 - +0.9 838,597 + +0.8 838,597 + +0.4 838,597 + -0.3 838,598 - +0.2 838,670 + +1.4 838,670 + +0.2 838,670 + -0.5 838,670 + +0.0 838,670 + +1.1 838,671 - +1.0 838,671 - +0.9 838,706 + +0.8 838,707 - +0.4 838,792 + +0.2 838,792 + +0.6 839,510 + PS417_03705 0.70 -0.1 839,652 - PS417_03705 0.82 -0.4 839,713 + PS417_03705 0.87 -0.3 839,713 + PS417_03705 0.87 +1.1 839,713 + PS417_03705 0.87 +0.5 839,916 - +0.2 839,916 - -0.6 839,918 - -1.6 839,918 - +1.7 839,918 - -2.1 839,918 - -1.1 839,949 + -0.1 839,950 - -0.3 839,950 - -0.2 839,961 - +0.5 840,162 + PS417_03710 0.26 +1.1 840,507 + PS417_03710 0.72 +0.6 840,507 + PS417_03710 0.72 +2.0 840,508 - PS417_03710 0.72 +1.7 840,543 + PS417_03710 0.77 +0.5 840,543 + PS417_03710 0.77 -0.0 840,544 - PS417_03710 0.77 +0.5 840,643 + PS417_03710 0.90 -0.0 840,643 + PS417_03710 0.90 +1.2 840,643 + PS417_03710 0.90 +1.4 840,643 + PS417_03710 0.90 +0.6 840,644 - -0.8 840,758 + +0.0 840,758 + +0.5 840,773 + -0.9 840,807 + -0.4 840,807 + -1.2 840,808 - +0.0 840,808 - -0.6 840,845 + +0.8 840,845 + -0.5 840,845 + -1.9 840,845 + -0.8
Or see this region's nucleotide sequence