Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03690 and PS417_03695 are separated by 14 nucleotides PS417_03695 and PS417_03700 are separated by 125 nucleotides
PS417_03690: PS417_03690 - NAD-dependent dehydratase, at 834,433 to 835,332
_03690
PS417_03695: PS417_03695 - ferrochelatase, at 835,347 to 836,372
_03695
PS417_03700: PS417_03700 - TonB-dependent receptor, at 836,498 to 838,594
_03700
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 834.385 kb on - strand at 834.386 kb on + strand at 834.392 kb on - strand at 834.416 kb on + strand at 834.567 kb on - strand, within PS417_03690 at 835.025 kb on + strand, within PS417_03690 at 835.026 kb on - strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.090 kb on + strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690 at 835.330 kb on + strand at 835.336 kb on + strand at 835.336 kb on + strand at 835.336 kb on + strand at 835.337 kb on - strand at 836.370 kb on + strand at 836.370 kb on + strand at 836.371 kb on - strand at 836.506 kb on + strand at 836.577 kb on + strand at 836.577 kb on + strand at 836.577 kb on + strand at 836.581 kb on - strand at 836.640 kb on + strand at 836.640 kb on + strand at 836.640 kb on + strand at 836.719 kb on - strand, within PS417_03700 at 836.719 kb on - strand, within PS417_03700 at 836.868 kb on + strand, within PS417_03700 at 836.869 kb on - strand, within PS417_03700 at 836.869 kb on - strand, within PS417_03700 at 836.903 kb on + strand, within PS417_03700 at 836.903 kb on + strand, within PS417_03700 at 836.904 kb on - strand, within PS417_03700 at 836.904 kb on - strand, within PS417_03700 at 836.991 kb on - strand, within PS417_03700
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 834,385 - +0.6 834,386 + -1.4 834,392 - -1.0 834,416 + -1.0 834,567 - PS417_03690 0.15 -1.2 835,025 + PS417_03690 0.66 -0.3 835,026 - PS417_03690 0.66 +1.4 835,029 + PS417_03690 0.66 -1.2 835,029 + PS417_03690 0.66 +0.1 835,029 + PS417_03690 0.66 +0.4 835,029 + PS417_03690 0.66 -1.7 835,029 + PS417_03690 0.66 -0.9 835,029 + PS417_03690 0.66 +2.2 835,029 + PS417_03690 0.66 -0.0 835,030 - PS417_03690 0.66 -0.8 835,030 - PS417_03690 0.66 +1.5 835,030 - PS417_03690 0.66 -0.0 835,030 - PS417_03690 0.66 -1.7 835,030 - PS417_03690 0.66 -0.9 835,030 - PS417_03690 0.66 -0.4 835,030 - PS417_03690 0.66 -0.9 835,030 - PS417_03690 0.66 -0.4 835,030 - PS417_03690 0.66 -0.2 835,030 - PS417_03690 0.66 -0.5 835,090 + PS417_03690 0.73 -0.5 835,091 - PS417_03690 0.73 -0.9 835,091 - PS417_03690 0.73 -1.3 835,091 - PS417_03690 0.73 +0.5 835,091 - PS417_03690 0.73 -0.3 835,092 + PS417_03690 0.73 -0.2 835,092 + PS417_03690 0.73 +0.3 835,093 - PS417_03690 0.73 -0.4 835,093 - PS417_03690 0.73 -0.4 835,330 + +1.8 835,336 + +2.5 835,336 + -0.1 835,336 + +3.0 835,337 - +0.6 836,370 + -1.0 836,370 + +0.2 836,371 - +2.5 836,506 + +0.2 836,577 + -0.5 836,577 + +1.8 836,577 + -0.9 836,581 - -1.2 836,640 + -0.7 836,640 + -0.5 836,640 + +0.0 836,719 - PS417_03700 0.11 -0.6 836,719 - PS417_03700 0.11 -0.5 836,868 + PS417_03700 0.18 -1.0 836,869 - PS417_03700 0.18 +1.2 836,869 - PS417_03700 0.18 -0.8 836,903 + PS417_03700 0.19 -0.3 836,903 + PS417_03700 0.19 -1.9 836,904 - PS417_03700 0.19 +1.1 836,904 - PS417_03700 0.19 -0.5 836,991 - PS417_03700 0.24 -0.2
Or see this region's nucleotide sequence