Strain Fitness in Pseudomonas simiae WCS417 around PS417_03680

Experiment: rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03675 and PS417_03680 are separated by 111 nucleotidesPS417_03680 and PS417_03685 overlap by 4 nucleotides PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913 _03675 PS417_03680: PS417_03680 - hypothetical protein, at 833,025 to 833,240 _03680 PS417_03685: PS417_03685 - FAD-dependent oxidoreductase, at 833,237 to 834,223 _03685 Position (kb) 833 834Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 832.333 kb on + strand, within PS417_03675at 832.333 kb on + strand, within PS417_03675at 832.333 kb on + strand, within PS417_03675at 832.334 kb on - strand, within PS417_03675at 832.340 kb on - strand, within PS417_03675at 832.513 kb on + strand, within PS417_03675at 832.514 kb on - strand, within PS417_03675at 832.514 kb on - strand, within PS417_03675at 832.559 kb on - strand, within PS417_03675at 832.652 kb on - strand, within PS417_03675at 832.913 kb on + strandat 832.974 kb on + strandat 832.974 kb on + strandat 833.332 kb on - strandat 833.968 kb on - strand, within PS417_03685at 834.055 kb on - strand, within PS417_03685at 834.238 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB
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832,333 + PS417_03675 0.39 +1.5
832,333 + PS417_03675 0.39 +4.3
832,333 + PS417_03675 0.39 +0.9
832,334 - PS417_03675 0.40 -2.2
832,340 - PS417_03675 0.40 -2.7
832,513 + PS417_03675 0.58 +1.1
832,514 - PS417_03675 0.58 +1.0
832,514 - PS417_03675 0.58 +1.4
832,559 - PS417_03675 0.63 -0.7
832,652 - PS417_03675 0.73 -1.5
832,913 + +1.2
832,974 + -0.1
832,974 + -0.0
833,332 - +0.1
833,968 - PS417_03685 0.74 -1.4
834,055 - PS417_03685 0.83 -1.3
834,238 + -0.6

Or see this region's nucleotide sequence