Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19940 and PS417_19945 are separated by 61 nucleotides PS417_19945 and PS417_19950 are separated by 121 nucleotides PS417_19950 and PS417_19955 are separated by 266 nucleotides PS417_19955 and PS417_19960 are separated by 20 nucleotides
PS417_19940: PS417_19940 - membrane protein, at 4,328,211 to 4,330,400
_19940
PS417_19945: PS417_19945 - MarR family transcriptional regulator, at 4,330,462 to 4,330,896
_19945
PS417_19950: PS417_19950 - ATP-dependent DNA helicase RecQ, at 4,331,018 to 4,333,144
_19950
PS417_19955: PS417_19955 - hypothetical protein, at 4,333,411 to 4,333,998
_19955
PS417_19960: PS417_19960 - membrane protein, at 4,334,019 to 4,334,402
_19960
Position (kb) 4331
4332
4333
4334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4330.164 kb on + strand, within PS417_19940 at 4330.167 kb on + strand, within PS417_19940 at 4330.215 kb on + strand at 4330.215 kb on + strand at 4330.216 kb on - strand at 4330.219 kb on + strand at 4330.279 kb on - strand at 4330.280 kb on + strand at 4330.280 kb on + strand at 4330.280 kb on + strand at 4330.280 kb on + strand at 4330.280 kb on + strand at 4330.281 kb on - strand at 4330.314 kb on - strand at 4330.342 kb on - strand at 4330.398 kb on + strand at 4330.398 kb on + strand at 4330.617 kb on + strand, within PS417_19945 at 4330.618 kb on - strand, within PS417_19945 at 4330.618 kb on - strand, within PS417_19945 at 4330.618 kb on - strand, within PS417_19945 at 4330.618 kb on - strand, within PS417_19945 at 4330.712 kb on - strand, within PS417_19945 at 4330.938 kb on + strand at 4330.938 kb on + strand at 4330.949 kb on + strand at 4330.987 kb on - strand at 4330.987 kb on - strand at 4331.020 kb on - strand at 4331.690 kb on + strand, within PS417_19950 at 4331.895 kb on + strand, within PS417_19950 at 4332.151 kb on - strand, within PS417_19950 at 4332.208 kb on - strand, within PS417_19950 at 4332.210 kb on + strand, within PS417_19950 at 4332.339 kb on + strand, within PS417_19950 at 4332.445 kb on - strand, within PS417_19950 at 4332.532 kb on + strand, within PS417_19950 at 4332.684 kb on + strand, within PS417_19950 at 4332.685 kb on - strand, within PS417_19950 at 4332.716 kb on + strand, within PS417_19950 at 4332.717 kb on - strand, within PS417_19950 at 4332.810 kb on + strand, within PS417_19950 at 4333.280 kb on + strand at 4333.281 kb on - strand at 4333.334 kb on + strand at 4333.334 kb on + strand at 4333.373 kb on + strand at 4333.402 kb on - strand at 4333.486 kb on + strand, within PS417_19955 at 4333.504 kb on + strand, within PS417_19955 at 4333.940 kb on - strand at 4334.132 kb on - strand, within PS417_19960
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 4,330,164 + PS417_19940 0.89 -0.3 4,330,167 + PS417_19940 0.89 -0.6 4,330,215 + -0.2 4,330,215 + -1.7 4,330,216 - +1.4 4,330,219 + -0.0 4,330,279 - -0.3 4,330,280 + -0.6 4,330,280 + +0.0 4,330,280 + -0.6 4,330,280 + +2.5 4,330,280 + -0.5 4,330,281 - +0.1 4,330,314 - -0.1 4,330,342 - +0.2 4,330,398 + -1.0 4,330,398 + +0.3 4,330,617 + PS417_19945 0.36 -1.3 4,330,618 - PS417_19945 0.36 -0.8 4,330,618 - PS417_19945 0.36 +0.2 4,330,618 - PS417_19945 0.36 -0.7 4,330,618 - PS417_19945 0.36 +0.8 4,330,712 - PS417_19945 0.57 -0.4 4,330,938 + +1.1 4,330,938 + -0.5 4,330,949 + -0.4 4,330,987 - +0.7 4,330,987 - +0.8 4,331,020 - +0.5 4,331,690 + PS417_19950 0.32 -0.6 4,331,895 + PS417_19950 0.41 -1.2 4,332,151 - PS417_19950 0.53 -0.1 4,332,208 - PS417_19950 0.56 -1.1 4,332,210 + PS417_19950 0.56 -0.5 4,332,339 + PS417_19950 0.62 -0.4 4,332,445 - PS417_19950 0.67 -0.8 4,332,532 + PS417_19950 0.71 -0.3 4,332,684 + PS417_19950 0.78 -0.9 4,332,685 - PS417_19950 0.78 -2.0 4,332,716 + PS417_19950 0.80 +0.6 4,332,717 - PS417_19950 0.80 -1.1 4,332,810 + PS417_19950 0.84 -0.0 4,333,280 + -0.4 4,333,281 - -1.8 4,333,334 + -0.5 4,333,334 + -0.9 4,333,373 + +0.8 4,333,402 - +1.3 4,333,486 + PS417_19955 0.13 -0.3 4,333,504 + PS417_19955 0.16 -1.1 4,333,940 - -0.1 4,334,132 - PS417_19960 0.29 +0.2
Or see this region's nucleotide sequence