Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01935 and PS417_01940 are separated by 216 nucleotides PS417_01940 and PS417_01945 are separated by 35 nucleotides PS417_01945 and PS417_01950 are separated by 181 nucleotides
PS417_01935: PS417_01935 - primosomal protein N', at 428,386 to 430,605
_01935
PS417_01940: PS417_01940 - 50S ribosomal protein L31, at 430,822 to 431,040
_01940
PS417_01945: PS417_01945 - nuclease, at 431,076 to 431,870
_01945
PS417_01950: PS417_01950 - malate dehydrogenase, at 432,052 to 433,320
_01950
Position (kb) 431
432 Strain fitness (log2 ratio) -2
-1
0
1
2 at 430.620 kb on - strand at 430.654 kb on + strand at 430.655 kb on - strand at 431.038 kb on + strand at 431.302 kb on - strand, within PS417_01945 at 431.419 kb on - strand, within PS417_01945 at 431.508 kb on - strand, within PS417_01945 at 431.922 kb on - strand at 431.935 kb on - strand at 431.955 kb on - strand at 432.007 kb on + strand at 432.035 kb on - strand at 432.051 kb on + strand at 432.051 kb on + strand at 432.116 kb on + strand at 432.117 kb on - strand at 432.117 kb on - strand at 432.163 kb on + strand at 432.164 kb on - strand at 432.227 kb on - strand, within PS417_01950 at 432.227 kb on - strand, within PS417_01950 at 432.327 kb on + strand, within PS417_01950 at 432.328 kb on - strand, within PS417_01950 at 432.697 kb on + strand, within PS417_01950 at 432.698 kb on - strand at 432.698 kb on - strand, within PS417_01950 at 432.751 kb on + strand, within PS417_01950
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 430,620 - -1.3 430,654 + -1.5 430,655 - -0.2 431,038 + +0.5 431,302 - PS417_01945 0.28 -0.2 431,419 - PS417_01945 0.43 +0.4 431,508 - PS417_01945 0.54 +0.5 431,922 - -0.5 431,935 - +1.0 431,955 - +0.3 432,007 + -1.2 432,035 - -0.4 432,051 + -1.0 432,051 + -1.8 432,116 + -1.1 432,117 - +0.3 432,117 - +2.1 432,163 + -1.1 432,164 - -0.8 432,227 - PS417_01950 0.14 -0.0 432,227 - PS417_01950 0.14 -0.6 432,327 + PS417_01950 0.22 -1.1 432,328 - PS417_01950 0.22 +1.3 432,697 + PS417_01950 0.51 +0.8 432,698 - +1.1 432,698 - PS417_01950 0.51 -1.1 432,751 + PS417_01950 0.55 +0.9
Or see this region's nucleotide sequence