Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18040 and PS417_18045 overlap by 4 nucleotides PS417_18045 and PS417_18050 overlap by 26 nucleotides PS417_18050 and PS417_18055 overlap by 4 nucleotides PS417_18055 and PS417_18060 overlap by 4 nucleotides
PS417_18040: PS417_18040 - general secretion pathway protein GspN, at 3,932,428 to 3,932,946
_18040
PS417_18045: PS417_18045 - general secretion pathway protein GspM, at 3,932,943 to 3,933,545
_18045
PS417_18050: PS417_18050 - general secretion pathway protein GspL, at 3,933,520 to 3,934,512
_18050
PS417_18055: PS417_18055 - general secretion pathway protein GspK, at 3,934,509 to 3,935,210
_18055
PS417_18060: PS417_18060 - general secretion pathway protein GspJ, at 3,935,207 to 3,935,776
_18060
Position (kb) 3933
3934
3935 Strain fitness (log2 ratio) -1
0
1
2 at 3932.894 kb on - strand, within PS417_18040 at 3933.382 kb on + strand, within PS417_18045 at 3933.562 kb on + strand at 3934.566 kb on + strand at 3934.765 kb on + strand, within PS417_18055 at 3934.940 kb on - strand, within PS417_18055 at 3935.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 3,932,894 - PS417_18040 0.90 -0.5 3,933,382 + PS417_18045 0.73 +0.3 3,933,562 + +1.5 3,934,566 + -0.0 3,934,765 + PS417_18055 0.36 +0.0 3,934,940 - PS417_18055 0.61 -1.4 3,935,081 + +2.0
Or see this region's nucleotide sequence