Experiment: rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01050 and PS417_01055 are separated by 118 nucleotides PS417_01055 and PS417_01060 are separated by 423 nucleotides
PS417_01050: PS417_01050 - ACR family transporter, at 228,326 to 231,391
_01050
PS417_01055: PS417_01055 - methyltransferase, at 231,510 to 232,136
_01055
PS417_01060: PS417_01060 - ABC transporter permease, at 232,560 to 233,204
_01060
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 230.557 kb on + strand, within PS417_01050 at 230.619 kb on + strand, within PS417_01050 at 230.774 kb on - strand, within PS417_01050 at 230.837 kb on + strand, within PS417_01050 at 231.128 kb on + strand at 231.143 kb on + strand at 231.145 kb on + strand at 231.146 kb on - strand at 231.270 kb on - strand at 231.333 kb on - strand at 231.345 kb on - strand at 231.436 kb on + strand at 231.437 kb on - strand at 231.437 kb on - strand at 231.437 kb on - strand at 231.438 kb on + strand at 231.438 kb on + strand at 231.438 kb on + strand at 231.438 kb on + strand at 231.439 kb on - strand at 231.439 kb on - strand at 231.439 kb on - strand at 231.439 kb on - strand at 231.511 kb on + strand at 231.519 kb on - strand at 231.574 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.578 kb on - strand, within PS417_01055 at 231.578 kb on - strand, within PS417_01055 at 231.992 kb on + strand, within PS417_01055 at 232.082 kb on - strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.168 kb on + strand at 232.168 kb on + strand at 232.168 kb on + strand at 232.169 kb on - strand at 232.244 kb on - strand at 232.284 kb on + strand at 232.284 kb on + strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.302 kb on + strand at 232.313 kb on + strand at 232.313 kb on + strand at 232.314 kb on - strand at 232.314 kb on - strand at 232.315 kb on + strand at 232.315 kb on + strand at 232.316 kb on - strand at 232.316 kb on - strand at 232.321 kb on + strand at 232.321 kb on + strand at 232.349 kb on + strand at 232.349 kb on + strand at 232.350 kb on - strand at 232.350 kb on - strand at 232.557 kb on + strand at 232.558 kb on - strand at 232.558 kb on - strand at 232.955 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 1; outgrowth in LB remove 230,557 + PS417_01050 0.73 +2.5 230,619 + PS417_01050 0.75 +1.2 230,774 - PS417_01050 0.80 -1.1 230,837 + PS417_01050 0.82 -0.8 231,128 + -0.2 231,143 + -0.3 231,145 + -1.6 231,146 - +3.1 231,270 - +1.6 231,333 - +0.3 231,345 - +0.1 231,436 + -0.4 231,437 - +0.8 231,437 - +0.2 231,437 - +0.7 231,438 + +0.1 231,438 + -0.9 231,438 + -0.3 231,438 + +3.1 231,439 - +0.8 231,439 - +0.2 231,439 - +0.1 231,439 - +0.0 231,511 + -0.8 231,519 - +1.3 231,574 + PS417_01055 0.10 -0.5 231,577 + PS417_01055 0.11 -0.5 231,577 + PS417_01055 0.11 -1.2 231,577 + PS417_01055 0.11 -1.7 231,578 - PS417_01055 0.11 -0.9 231,578 - PS417_01055 0.11 +1.3 231,992 + PS417_01055 0.77 -1.4 232,082 - +1.5 232,166 + -3.3 232,166 + -1.4 232,166 + +0.5 232,166 + +0.5 232,167 - +5.5 232,167 - +0.4 232,167 - +0.4 232,167 - -0.1 232,167 - -0.4 232,168 + -0.4 232,168 + -1.0 232,168 + +0.7 232,169 - -0.3 232,244 - -3.1 232,284 + +0.3 232,284 + +0.5 232,285 - -0.1 232,285 - -0.1 232,285 - -0.5 232,302 + -0.2 232,313 + -0.5 232,313 + -0.3 232,314 - -1.3 232,314 - -0.5 232,315 + -0.5 232,315 + +0.2 232,316 - -0.3 232,316 - -0.3 232,321 + +0.6 232,321 + +0.4 232,349 + +0.0 232,349 + +0.5 232,350 - -0.2 232,350 - -0.5 232,557 + +1.5 232,558 - -1.6 232,558 - +0.7 232,955 - PS417_01060 0.61 +0.1 233,075 - PS417_01060 0.80 +0.4 233,075 - PS417_01060 0.80 +1.3 233,075 - PS417_01060 0.80 -0.1 233,075 - PS417_01060 0.80 +0.8 233,078 + PS417_01060 0.80 -0.6 233,078 + PS417_01060 0.80 -0.5 233,078 + PS417_01060 0.80 -0.8 233,079 - PS417_01060 0.80 -0.3 233,079 - PS417_01060 0.80 +2.7
Or see this region's nucleotide sequence