Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3826 and Atu3827 are separated by 2 nucleotides Atu3827 and Atu3828 are separated by 50 nucleotides Atu3828 and Atu3829 are separated by 66 nucleotides
Atu3826: Atu3826 - acyl-CoA hydrolase, at 922,011 to 922,841
Atu3826
Atu3827: Atu3827 - LysR family transcriptional regulator, at 922,844 to 923,731
Atu3827
Atu3828: Atu3828 - acetyltransferase, at 923,782 to 924,360
Atu3828
Atu3829: Atu3829 - LysR family transcriptional regulator, at 924,427 to 925,278
Atu3829
Position (kb) 922
923
924 Strain fitness (log2 ratio) -1
0
1 at 921.861 kb on + strand at 921.876 kb on - strand at 921.922 kb on + strand at 921.932 kb on - strand at 921.948 kb on + strand at 921.956 kb on - strand at 921.962 kb on - strand at 921.974 kb on + strand at 921.995 kb on + strand at 922.003 kb on - strand at 922.003 kb on - strand at 922.003 kb on - strand at 922.027 kb on - strand at 922.105 kb on - strand, within Atu3826 at 922.110 kb on + strand, within Atu3826 at 922.120 kb on + strand, within Atu3826 at 922.134 kb on - strand, within Atu3826 at 922.134 kb on - strand, within Atu3826 at 922.134 kb on - strand, within Atu3826 at 922.134 kb on - strand, within Atu3826 at 922.182 kb on + strand, within Atu3826 at 922.184 kb on + strand, within Atu3826 at 922.265 kb on + strand, within Atu3826 at 922.273 kb on - strand, within Atu3826 at 922.342 kb on + strand, within Atu3826 at 922.345 kb on - strand, within Atu3826 at 922.350 kb on - strand, within Atu3826 at 922.360 kb on + strand, within Atu3826 at 922.437 kb on + strand, within Atu3826 at 922.440 kb on - strand, within Atu3826 at 922.505 kb on - strand, within Atu3826 at 922.513 kb on - strand, within Atu3826 at 922.526 kb on - strand, within Atu3826 at 922.594 kb on - strand, within Atu3826 at 922.594 kb on - strand, within Atu3826 at 922.731 kb on - strand, within Atu3826 at 922.811 kb on + strand at 922.834 kb on + strand at 922.836 kb on + strand at 922.842 kb on - strand at 922.844 kb on - strand at 922.857 kb on - strand at 922.926 kb on - strand at 922.937 kb on + strand, within Atu3827 at 922.952 kb on - strand, within Atu3827 at 922.980 kb on - strand, within Atu3827 at 923.015 kb on - strand, within Atu3827 at 923.029 kb on - strand, within Atu3827 at 923.169 kb on - strand, within Atu3827 at 923.204 kb on - strand, within Atu3827 at 923.344 kb on - strand, within Atu3827 at 923.351 kb on + strand, within Atu3827 at 923.417 kb on + strand, within Atu3827 at 923.427 kb on + strand, within Atu3827 at 923.624 kb on + strand, within Atu3827 at 923.632 kb on - strand, within Atu3827 at 923.666 kb on - strand at 923.758 kb on + strand at 923.788 kb on + strand at 923.833 kb on - strand at 923.842 kb on + strand, within Atu3828 at 923.848 kb on - strand, within Atu3828 at 923.917 kb on + strand, within Atu3828 at 923.917 kb on + strand, within Atu3828 at 923.925 kb on - strand, within Atu3828 at 924.095 kb on + strand, within Atu3828 at 924.107 kb on - strand, within Atu3828 at 924.109 kb on + strand, within Atu3828 at 924.138 kb on + strand, within Atu3828 at 924.145 kb on + strand, within Atu3828 at 924.172 kb on + strand, within Atu3828 at 924.172 kb on - strand, within Atu3828 at 924.195 kb on + strand, within Atu3828 at 924.199 kb on - strand, within Atu3828 at 924.203 kb on - strand, within Atu3828 at 924.206 kb on + strand, within Atu3828 at 924.235 kb on + strand, within Atu3828 at 924.250 kb on - strand, within Atu3828 at 924.257 kb on - strand, within Atu3828 at 924.268 kb on - strand, within Atu3828 at 924.348 kb on - strand at 924.418 kb on - strand at 924.507 kb on - strand at 924.538 kb on + strand, within Atu3829 at 924.546 kb on - strand, within Atu3829 at 924.559 kb on + strand, within Atu3829 at 924.656 kb on - strand, within Atu3829
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 921,861 + +0.2 921,876 - -0.6 921,922 + -0.3 921,932 - -0.4 921,948 + +0.6 921,956 - -0.2 921,962 - +0.7 921,974 + -0.1 921,995 + +0.2 922,003 - -0.1 922,003 - +0.2 922,003 - -0.2 922,027 - -0.3 922,105 - Atu3826 0.11 +0.2 922,110 + Atu3826 0.12 -0.0 922,120 + Atu3826 0.13 +0.0 922,134 - Atu3826 0.15 -0.4 922,134 - Atu3826 0.15 +0.5 922,134 - Atu3826 0.15 -0.8 922,134 - Atu3826 0.15 -0.1 922,182 + Atu3826 0.21 +0.7 922,184 + Atu3826 0.21 +0.2 922,265 + Atu3826 0.31 +0.3 922,273 - Atu3826 0.32 +0.1 922,342 + Atu3826 0.40 -0.3 922,345 - Atu3826 0.40 -0.3 922,350 - Atu3826 0.41 -0.0 922,360 + Atu3826 0.42 +0.0 922,437 + Atu3826 0.51 +0.3 922,440 - Atu3826 0.52 -0.2 922,505 - Atu3826 0.59 -0.0 922,513 - Atu3826 0.60 -0.2 922,526 - Atu3826 0.62 -0.5 922,594 - Atu3826 0.70 -0.2 922,594 - Atu3826 0.70 +1.5 922,731 - Atu3826 0.87 +0.6 922,811 + +0.4 922,834 + +1.2 922,836 + +0.5 922,842 - +1.3 922,844 - -0.2 922,857 - +0.1 922,926 - -0.3 922,937 + Atu3827 0.10 +1.0 922,952 - Atu3827 0.12 +0.4 922,980 - Atu3827 0.15 +0.6 923,015 - Atu3827 0.19 +0.3 923,029 - Atu3827 0.21 +1.0 923,169 - Atu3827 0.37 +0.4 923,204 - Atu3827 0.41 -0.5 923,344 - Atu3827 0.56 +0.3 923,351 + Atu3827 0.57 -0.1 923,417 + Atu3827 0.65 -0.4 923,427 + Atu3827 0.66 +1.4 923,624 + Atu3827 0.88 -0.9 923,632 - Atu3827 0.89 +1.1 923,666 - -0.9 923,758 + -0.4 923,788 + +0.8 923,833 - -0.4 923,842 + Atu3828 0.10 +0.1 923,848 - Atu3828 0.11 -0.0 923,917 + Atu3828 0.23 +0.0 923,917 + Atu3828 0.23 -0.3 923,925 - Atu3828 0.25 -0.2 924,095 + Atu3828 0.54 -0.8 924,107 - Atu3828 0.56 +0.6 924,109 + Atu3828 0.56 +0.0 924,138 + Atu3828 0.61 -0.6 924,145 + Atu3828 0.63 -0.3 924,172 + Atu3828 0.67 +1.0 924,172 - Atu3828 0.67 -0.2 924,195 + Atu3828 0.71 -0.1 924,199 - Atu3828 0.72 +0.1 924,203 - Atu3828 0.73 -0.2 924,206 + Atu3828 0.73 -0.2 924,235 + Atu3828 0.78 -1.2 924,250 - Atu3828 0.81 -0.2 924,257 - Atu3828 0.82 +1.5 924,268 - Atu3828 0.84 +0.7 924,348 - +0.5 924,418 - -0.0 924,507 - -0.4 924,538 + Atu3829 0.13 +0.4 924,546 - Atu3829 0.14 -0.0 924,559 + Atu3829 0.15 -0.2 924,656 - Atu3829 0.27 -0.3
Or see this region's nucleotide sequence