Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3126 and Atu3127 are separated by 391 nucleotides Atu3127 and Atu3128 are separated by 153 nucleotides
Atu3126: Atu3126 - hypothetical protein, at 133,057 to 133,344
Atu3126
Atu3127: Atu3127 - acetyltransferase, at 133,736 to 134,833
Atu3127
Atu3128: Atu3128 - di-trans,poly-cis-decaprenylcistransferase, at 134,987 to 136,084
Atu3128
Position (kb) 133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.781 kb on + strand at 132.876 kb on - strand at 132.897 kb on - strand at 132.931 kb on + strand at 132.987 kb on + strand at 133.040 kb on + strand at 133.107 kb on + strand, within Atu3126 at 133.126 kb on + strand, within Atu3126 at 133.148 kb on + strand, within Atu3126 at 133.148 kb on + strand, within Atu3126 at 133.178 kb on - strand, within Atu3126 at 133.289 kb on - strand, within Atu3126 at 133.323 kb on - strand at 133.323 kb on - strand at 133.325 kb on + strand at 133.445 kb on - strand at 133.471 kb on + strand at 133.479 kb on - strand at 133.528 kb on + strand at 133.530 kb on - strand at 133.541 kb on - strand at 133.625 kb on - strand at 133.675 kb on + strand at 133.733 kb on + strand at 133.937 kb on + strand, within Atu3127 at 133.970 kb on + strand, within Atu3127 at 133.970 kb on + strand, within Atu3127 at 133.978 kb on - strand, within Atu3127 at 134.004 kb on + strand, within Atu3127 at 134.026 kb on + strand, within Atu3127 at 134.052 kb on - strand, within Atu3127 at 134.052 kb on - strand, within Atu3127 at 134.092 kb on + strand, within Atu3127 at 134.103 kb on + strand, within Atu3127 at 134.116 kb on - strand, within Atu3127 at 134.139 kb on + strand, within Atu3127 at 134.237 kb on + strand, within Atu3127 at 134.422 kb on + strand, within Atu3127 at 134.442 kb on + strand, within Atu3127 at 134.544 kb on - strand, within Atu3127 at 134.604 kb on + strand, within Atu3127 at 134.732 kb on - strand at 134.778 kb on + strand at 134.785 kb on + strand at 134.786 kb on - strand at 134.811 kb on - strand at 134.821 kb on - strand at 134.906 kb on - strand at 135.006 kb on - strand at 135.061 kb on - strand at 135.169 kb on - strand, within Atu3128 at 135.216 kb on + strand, within Atu3128 at 135.217 kb on - strand, within Atu3128 at 135.253 kb on + strand, within Atu3128 at 135.275 kb on - strand, within Atu3128 at 135.389 kb on + strand, within Atu3128 at 135.427 kb on + strand, within Atu3128 at 135.434 kb on + strand, within Atu3128 at 135.541 kb on + strand, within Atu3128 at 135.637 kb on + strand, within Atu3128 at 135.645 kb on - strand, within Atu3128 at 135.702 kb on + strand, within Atu3128 at 135.707 kb on + strand, within Atu3128 at 135.710 kb on - strand, within Atu3128 at 135.715 kb on - strand, within Atu3128
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 132,781 + -0.9 132,876 - -0.6 132,897 - +0.1 132,931 + +0.2 132,987 + +0.2 133,040 + +0.1 133,107 + Atu3126 0.17 -0.4 133,126 + Atu3126 0.24 -2.6 133,148 + Atu3126 0.32 -0.4 133,148 + Atu3126 0.32 +0.8 133,178 - Atu3126 0.42 +0.3 133,289 - Atu3126 0.81 -0.8 133,323 - +0.2 133,323 - -0.2 133,325 + +0.1 133,445 - +0.1 133,471 + -1.9 133,479 - -0.3 133,528 + +2.0 133,530 - -0.4 133,541 - -0.1 133,625 - +0.6 133,675 + +0.6 133,733 + +0.3 133,937 + Atu3127 0.18 -0.1 133,970 + Atu3127 0.21 +1.0 133,970 + Atu3127 0.21 +0.6 133,978 - Atu3127 0.22 +0.2 134,004 + Atu3127 0.24 -0.1 134,026 + Atu3127 0.26 +0.3 134,052 - Atu3127 0.29 +0.6 134,052 - Atu3127 0.29 +0.0 134,092 + Atu3127 0.32 +1.0 134,103 + Atu3127 0.33 -0.7 134,116 - Atu3127 0.35 +0.1 134,139 + Atu3127 0.37 +1.6 134,237 + Atu3127 0.46 +0.1 134,422 + Atu3127 0.62 +1.2 134,442 + Atu3127 0.64 -0.2 134,544 - Atu3127 0.74 +0.2 134,604 + Atu3127 0.79 -0.8 134,732 - -0.0 134,778 + -0.1 134,785 + +0.9 134,786 - +0.4 134,811 - -0.1 134,821 - -0.0 134,906 - +0.0 135,006 - -0.5 135,061 - +0.0 135,169 - Atu3128 0.17 -0.1 135,216 + Atu3128 0.21 +0.4 135,217 - Atu3128 0.21 +1.5 135,253 + Atu3128 0.24 -0.1 135,275 - Atu3128 0.26 +0.2 135,389 + Atu3128 0.37 -0.1 135,427 + Atu3128 0.40 -0.5 135,434 + Atu3128 0.41 +0.2 135,541 + Atu3128 0.50 +0.8 135,637 + Atu3128 0.59 -0.5 135,645 - Atu3128 0.60 -0.1 135,702 + Atu3128 0.65 +0.2 135,707 + Atu3128 0.66 -0.2 135,710 - Atu3128 0.66 -0.3 135,715 - Atu3128 0.66 -0.2
Or see this region's nucleotide sequence