Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3860 and Atu3861 are separated by 168 nucleotides Atu3861 and Atu3862 are separated by 134 nucleotides Atu3862 and Atu3863 are separated by 41 nucleotides
Atu3860: Atu3860 - hypothetical protein, at 948,602 to 950,845
Atu3860
Atu3861: Atu3861 - acyl-CoA hydrolase, at 951,014 to 951,403
Atu3861
Atu3862: Atu3862 - hypothetical protein, at 951,538 to 951,771
Atu3862
Atu3863: Atu3863 - ABC transporter permease, at 951,813 to 953,294
Atu3863
Position (kb) 951
952 Strain fitness (log2 ratio) -2
-1
0
1 at 950.036 kb on + strand, within Atu3860 at 950.051 kb on - strand, within Atu3860 at 950.161 kb on + strand, within Atu3860 at 950.282 kb on + strand, within Atu3860 at 950.343 kb on + strand, within Atu3860 at 950.450 kb on + strand, within Atu3860 at 950.492 kb on - strand, within Atu3860 at 950.529 kb on - strand, within Atu3860 at 950.726 kb on + strand at 950.763 kb on + strand at 950.763 kb on + strand at 950.778 kb on - strand at 950.799 kb on + strand at 950.824 kb on + strand at 950.830 kb on + strand at 950.840 kb on + strand at 950.863 kb on + strand at 950.924 kb on + strand at 951.003 kb on + strand at 951.020 kb on - strand at 951.029 kb on - strand at 951.041 kb on - strand at 951.060 kb on - strand, within Atu3861 at 951.089 kb on - strand, within Atu3861 at 951.096 kb on + strand, within Atu3861 at 951.218 kb on + strand, within Atu3861 at 951.244 kb on + strand, within Atu3861 at 951.246 kb on - strand, within Atu3861 at 951.327 kb on - strand, within Atu3861 at 951.438 kb on + strand at 951.451 kb on - strand at 951.451 kb on - strand at 951.490 kb on + strand at 951.498 kb on - strand at 951.569 kb on - strand, within Atu3862 at 951.588 kb on - strand, within Atu3862 at 951.613 kb on - strand, within Atu3862 at 951.677 kb on + strand, within Atu3862 at 951.677 kb on + strand, within Atu3862 at 951.677 kb on + strand, within Atu3862 at 951.677 kb on + strand, within Atu3862 at 951.677 kb on + strand, within Atu3862 at 951.677 kb on + strand, within Atu3862 at 951.685 kb on - strand, within Atu3862 at 951.685 kb on - strand, within Atu3862 at 951.746 kb on - strand, within Atu3862 at 951.778 kb on - strand at 951.786 kb on - strand at 951.790 kb on + strand at 951.790 kb on + strand at 951.798 kb on - strand at 951.798 kb on - strand at 951.812 kb on + strand at 951.852 kb on - strand at 951.927 kb on - strand at 951.964 kb on + strand, within Atu3863 at 952.228 kb on + strand, within Atu3863 at 952.233 kb on - strand, within Atu3863 at 952.241 kb on - strand, within Atu3863 at 952.250 kb on + strand, within Atu3863 at 952.291 kb on - strand, within Atu3863 at 952.331 kb on + strand, within Atu3863 at 952.373 kb on + strand, within Atu3863
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 950,036 + Atu3860 0.64 -0.2 950,051 - Atu3860 0.65 -0.1 950,161 + Atu3860 0.69 +0.5 950,282 + Atu3860 0.75 +0.2 950,343 + Atu3860 0.78 +0.1 950,450 + Atu3860 0.82 -0.1 950,492 - Atu3860 0.84 -0.5 950,529 - Atu3860 0.86 +0.3 950,726 + -0.4 950,763 + +0.1 950,763 + -0.0 950,778 - -0.3 950,799 + -0.1 950,824 + +0.0 950,830 + +0.0 950,840 + +0.4 950,863 + -0.6 950,924 + -1.5 951,003 + -1.6 951,020 - -1.9 951,029 - -0.2 951,041 - +1.2 951,060 - Atu3861 0.12 +0.1 951,089 - Atu3861 0.19 +0.1 951,096 + Atu3861 0.21 -0.2 951,218 + Atu3861 0.52 +0.4 951,244 + Atu3861 0.59 +0.1 951,246 - Atu3861 0.59 +1.2 951,327 - Atu3861 0.80 +0.5 951,438 + +0.1 951,451 - +0.0 951,451 - -0.1 951,490 + +0.1 951,498 - +0.2 951,569 - Atu3862 0.13 +0.7 951,588 - Atu3862 0.21 +0.5 951,613 - Atu3862 0.32 +0.4 951,677 + Atu3862 0.59 +0.8 951,677 + Atu3862 0.59 -0.2 951,677 + Atu3862 0.59 -0.2 951,677 + Atu3862 0.59 -0.2 951,677 + Atu3862 0.59 -0.2 951,677 + Atu3862 0.59 +0.1 951,685 - Atu3862 0.63 -0.1 951,685 - Atu3862 0.63 +0.3 951,746 - Atu3862 0.89 -0.4 951,778 - +0.1 951,786 - +0.8 951,790 + -0.2 951,790 + -0.0 951,798 - +0.4 951,798 - -1.6 951,812 + -0.2 951,852 - -0.9 951,927 - +0.0 951,964 + Atu3863 0.10 -0.3 952,228 + Atu3863 0.28 +0.1 952,233 - Atu3863 0.28 +0.8 952,241 - Atu3863 0.29 +0.8 952,250 + Atu3863 0.29 -0.4 952,291 - Atu3863 0.32 -0.3 952,331 + Atu3863 0.35 -0.2 952,373 + Atu3863 0.38 -0.9
Or see this region's nucleotide sequence