Strain Fitness in Agrobacterium fabrum C58 around Atu3827

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3826 and Atu3827 are separated by 2 nucleotidesAtu3827 and Atu3828 are separated by 50 nucleotidesAtu3828 and Atu3829 are separated by 66 nucleotides Atu3826: Atu3826 - acyl-CoA hydrolase, at 922,011 to 922,841 Atu3826 Atu3827: Atu3827 - LysR family transcriptional regulator, at 922,844 to 923,731 Atu3827 Atu3828: Atu3828 - acetyltransferase, at 923,782 to 924,360 Atu3828 Atu3829: Atu3829 - LysR family transcriptional regulator, at 924,427 to 925,278 Atu3829 Position (kb) 922 923 924Strain fitness (log2 ratio) -2 -1 0 1at 921.861 kb on + strandat 921.876 kb on - strandat 921.922 kb on + strandat 921.932 kb on - strandat 921.948 kb on + strandat 921.956 kb on - strandat 921.962 kb on - strandat 921.974 kb on + strandat 921.995 kb on + strandat 922.003 kb on - strandat 922.003 kb on - strandat 922.003 kb on - strandat 922.027 kb on - strandat 922.105 kb on - strand, within Atu3826at 922.110 kb on + strand, within Atu3826at 922.120 kb on + strand, within Atu3826at 922.134 kb on - strand, within Atu3826at 922.134 kb on - strand, within Atu3826at 922.134 kb on - strand, within Atu3826at 922.134 kb on - strand, within Atu3826at 922.182 kb on + strand, within Atu3826at 922.184 kb on + strand, within Atu3826at 922.265 kb on + strand, within Atu3826at 922.273 kb on - strand, within Atu3826at 922.342 kb on + strand, within Atu3826at 922.345 kb on - strand, within Atu3826at 922.350 kb on - strand, within Atu3826at 922.360 kb on + strand, within Atu3826at 922.437 kb on + strand, within Atu3826at 922.440 kb on - strand, within Atu3826at 922.505 kb on - strand, within Atu3826at 922.513 kb on - strand, within Atu3826at 922.526 kb on - strand, within Atu3826at 922.594 kb on - strand, within Atu3826at 922.594 kb on - strand, within Atu3826at 922.731 kb on - strand, within Atu3826at 922.811 kb on + strandat 922.834 kb on + strandat 922.836 kb on + strandat 922.842 kb on - strandat 922.844 kb on - strandat 922.857 kb on - strandat 922.926 kb on - strandat 922.937 kb on + strand, within Atu3827at 922.952 kb on - strand, within Atu3827at 922.980 kb on - strand, within Atu3827at 923.015 kb on - strand, within Atu3827at 923.029 kb on - strand, within Atu3827at 923.169 kb on - strand, within Atu3827at 923.204 kb on - strand, within Atu3827at 923.344 kb on - strand, within Atu3827at 923.351 kb on + strand, within Atu3827at 923.417 kb on + strand, within Atu3827at 923.427 kb on + strand, within Atu3827at 923.624 kb on + strand, within Atu3827at 923.632 kb on - strand, within Atu3827at 923.666 kb on - strandat 923.758 kb on + strandat 923.788 kb on + strandat 923.833 kb on - strandat 923.842 kb on + strand, within Atu3828at 923.848 kb on - strand, within Atu3828at 923.917 kb on + strand, within Atu3828at 923.917 kb on + strand, within Atu3828at 923.925 kb on - strand, within Atu3828at 924.095 kb on + strand, within Atu3828at 924.107 kb on - strand, within Atu3828at 924.109 kb on + strand, within Atu3828at 924.138 kb on + strand, within Atu3828at 924.145 kb on + strand, within Atu3828at 924.172 kb on + strand, within Atu3828at 924.172 kb on - strand, within Atu3828at 924.195 kb on + strand, within Atu3828at 924.199 kb on - strand, within Atu3828at 924.203 kb on - strand, within Atu3828at 924.206 kb on + strand, within Atu3828at 924.235 kb on + strand, within Atu3828at 924.250 kb on - strand, within Atu3828at 924.257 kb on - strand, within Atu3828at 924.268 kb on - strand, within Atu3828at 924.348 kb on - strandat 924.418 kb on - strandat 924.507 kb on - strandat 924.538 kb on + strand, within Atu3829at 924.546 kb on - strand, within Atu3829at 924.559 kb on + strand, within Atu3829at 924.656 kb on - strand, within Atu3829

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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921,861 + +0.5
921,876 - -0.6
921,922 + -0.4
921,932 - -0.5
921,948 + -1.8
921,956 - +0.0
921,962 - +1.7
921,974 + +1.5
921,995 + -0.6
922,003 - +0.3
922,003 - +0.2
922,003 - +0.5
922,027 - +0.4
922,105 - Atu3826 0.11 -0.2
922,110 + Atu3826 0.12 -0.2
922,120 + Atu3826 0.13 -0.3
922,134 - Atu3826 0.15 -0.6
922,134 - Atu3826 0.15 +0.5
922,134 - Atu3826 0.15 +0.8
922,134 - Atu3826 0.15 -0.0
922,182 + Atu3826 0.21 +0.2
922,184 + Atu3826 0.21 +0.0
922,265 + Atu3826 0.31 +0.1
922,273 - Atu3826 0.32 +0.4
922,342 + Atu3826 0.40 -0.3
922,345 - Atu3826 0.40 +0.1
922,350 - Atu3826 0.41 -2.0
922,360 + Atu3826 0.42 -1.1
922,437 + Atu3826 0.51 -0.4
922,440 - Atu3826 0.52 -0.6
922,505 - Atu3826 0.59 -0.6
922,513 - Atu3826 0.60 +0.1
922,526 - Atu3826 0.62 +0.1
922,594 - Atu3826 0.70 -0.0
922,594 - Atu3826 0.70 +0.7
922,731 - Atu3826 0.87 +0.2
922,811 + -0.7
922,834 + +0.6
922,836 + +0.7
922,842 - +1.7
922,844 - +0.2
922,857 - +0.0
922,926 - +0.2
922,937 + Atu3827 0.10 -0.1
922,952 - Atu3827 0.12 +0.2
922,980 - Atu3827 0.15 +0.4
923,015 - Atu3827 0.19 -0.4
923,029 - Atu3827 0.21 +0.1
923,169 - Atu3827 0.37 +0.8
923,204 - Atu3827 0.41 +0.5
923,344 - Atu3827 0.56 +0.9
923,351 + Atu3827 0.57 +0.3
923,417 + Atu3827 0.65 -0.4
923,427 + Atu3827 0.66 +0.5
923,624 + Atu3827 0.88 +0.7
923,632 - Atu3827 0.89 +0.8
923,666 - -0.4
923,758 + +0.4
923,788 + +1.0
923,833 - -0.2
923,842 + Atu3828 0.10 +0.0
923,848 - Atu3828 0.11 -0.6
923,917 + Atu3828 0.23 +0.1
923,917 + Atu3828 0.23 -0.1
923,925 - Atu3828 0.25 -0.1
924,095 + Atu3828 0.54 +0.2
924,107 - Atu3828 0.56 +0.5
924,109 + Atu3828 0.56 -0.2
924,138 + Atu3828 0.61 -1.0
924,145 + Atu3828 0.63 -0.3
924,172 + Atu3828 0.67 +0.6
924,172 - Atu3828 0.67 -0.2
924,195 + Atu3828 0.71 -0.2
924,199 - Atu3828 0.72 +0.1
924,203 - Atu3828 0.73 -0.2
924,206 + Atu3828 0.73 -0.2
924,235 + Atu3828 0.78 -0.8
924,250 - Atu3828 0.81 -0.1
924,257 - Atu3828 0.82 -1.4
924,268 - Atu3828 0.84 +0.4
924,348 - +0.3
924,418 - +0.4
924,507 - -0.3
924,538 + Atu3829 0.13 -0.3
924,546 - Atu3829 0.14 -0.6
924,559 + Atu3829 0.15 +0.1
924,656 - Atu3829 0.27 -0.2

Or see this region's nucleotide sequence